Variant report

Variant	rs9476930
Chromosome Location	chr6:15791907-15791908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15788511..15792316-chr6:15794070..15797091,4	K562	blood:
2	chr6:15784886..15786712-chr6:15791467..15793235,2	K562	blood:
3	chr6:15789517..15794468-chr6:16128845..16131804,5	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11751408	0.81[ASN][1000 genomes]
rs12110659	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13198914	0.85[ASN][1000 genomes]
rs13211098	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13219486	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17477477	0.81[ASN][1000 genomes]
rs183397	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs191986	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2007855	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220890	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs220891	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs220894	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs220895	0.89[CEU][hapmap]
rs220896	0.89[CEU][hapmap];0.86[CHB][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs220898	0.89[CEU][hapmap]
rs220899	0.90[CEU][hapmap]
rs220900	0.89[CEU][hapmap]
rs220901	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs220908	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs220917	0.83[EUR][1000 genomes]
rs220918	0.83[EUR][1000 genomes]
rs220919	0.84[EUR][1000 genomes]
rs220920	0.83[EUR][1000 genomes]
rs374814	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs387816	0.82[CEU][hapmap]
rs398785	0.89[CEU][hapmap];0.86[CHB][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs413080	0.89[CEU][hapmap]
rs420350	0.89[CEU][hapmap];0.86[CHB][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4348320	0.85[ASN][1000 genomes]
rs62394862	0.81[ASN][1000 genomes]
rs62396773	1.00[ASN][1000 genomes]
rs6908590	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925310	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6937161	0.82[EUR][1000 genomes]
rs6941542	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74111	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9464820	0.86[CHB][hapmap]
rs9464821	0.82[CHB][hapmap]
rs9464828	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9464829	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9464833	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9476904	0.86[CHB][hapmap]
rs9476913	0.85[CEU][hapmap];0.86[CHB][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9476931	0.96[EUR][1000 genomes]
rs9476932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476935	0.81[EUR][1000 genomes]
rs9476936	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9476940	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9476941	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs990062	0.86[CHB][hapmap]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15790600-15792200	Enhancers	Fetal Brain Female	brain
2	chr6:15790600-15793600	Enhancers	Fetal Intestine Small	intestine
3	chr6:15790600-15794600	Enhancers	Fetal Intestine Large	intestine
4	chr6:15790800-15792200	Enhancers	Fetal Brain Male	brain
5	chr6:15790800-15793800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:15791000-15792000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:15791000-15792000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:15791000-15792400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:15791000-15793800	Enhancers	Pancreas	Pancrea
10	chr6:15791000-15796400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr6:15791000-15798000	Enhancers	Fetal Muscle Leg	muscle
12	chr6:15791200-15792000	Enhancers	Fetal Kidney	kidney
13	chr6:15791200-15792000	Weak transcription	Psoas Muscle	Psoas
14	chr6:15791200-15792000	Enhancers	Stomach Mucosa	stomach
15	chr6:15791200-15792800	Enhancers	K562	blood
16	chr6:15791200-15793200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:15791200-15793800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:15791400-15792000	Weak transcription	Gastric	stomach
19	chr6:15791400-15792200	Flanking Active TSS	HepG2	liver
20	chr6:15791400-15794400	Enhancers	HMEC	breast
21	chr6:15791600-15792200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:15791600-15794600	Enhancers	HSMMtube	muscle
23	chr6:15791600-15796400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr6:15791800-15792000	Enhancers	Aorta	Aorta
25	chr6:15791800-15792200	Enhancers	Placenta	Placenta
26	chr6:15791800-15792200	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr6:15791800-15792200	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr6:15791800-15792600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:15791800-15793800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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