Variant report

Variant	rs13219486
Chromosome Location	chr6:15801167-15801168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15793143..15797186-chr6:15800762..15804369,3	K562	blood:
2	chr6:15800944..15803032-chr6:16138888..16140630,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11751408	0.92[ASN][1000 genomes]
rs12110659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13198914	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13207279	0.84[ASN][1000 genomes]
rs13211098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17477477	0.92[ASN][1000 genomes]
rs183397	0.81[CEU][hapmap]
rs190084	0.94[EUR][1000 genomes]
rs191986	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[ASN][1000 genomes]
rs2007855	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.89[ASN][1000 genomes]
rs220887	0.88[ASN][1000 genomes]
rs220896	0.86[CHB][hapmap];0.90[CHD][hapmap];0.91[MEX][hapmap]
rs373949	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs374814	0.85[ASN][1000 genomes]
rs387725	0.93[EUR][1000 genomes]
rs387816	1.00[CEU][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs398785	0.86[CHB][hapmap]
rs420350	0.86[CHB][hapmap];0.90[CHD][hapmap];0.91[MEX][hapmap]
rs426166	0.96[EUR][1000 genomes]
rs4348320	0.96[ASN][1000 genomes]
rs552546	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs62394862	0.92[ASN][1000 genomes]
rs62396773	0.89[ASN][1000 genomes]
rs6908590	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6914658	0.94[EUR][1000 genomes]
rs6925310	0.82[CEU][hapmap]
rs6937161	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6941542	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74111	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[MEX][hapmap]
rs9464820	0.86[CHB][hapmap]
rs9464821	0.82[CHB][hapmap]
rs9464828	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9464829	0.82[CEU][hapmap]
rs9464833	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9476903	0.90[CHD][hapmap];0.86[MEX][hapmap]
rs9476904	0.86[CHB][hapmap]
rs9476913	0.86[CHB][hapmap]
rs9476930	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9476932	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9476936	0.86[ASN][1000 genomes]
rs9476940	1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9476941	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs990062	0.86[CHB][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13219486	RANBP9	cis	parietal	SCAN
rs13219486	FAM8A1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15800400-15816200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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