Variant report

Variant	rs6908590
Chromosome Location	chr6:15792617-15792618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15786898..15789429-chr6:15792470..15795145,2	K562	blood:
2	chr6:15784886..15786712-chr6:15791467..15793235,2	K562	blood:
3	chr6:15789517..15794468-chr6:16128845..16131804,5	K562	blood:
4	chr6:15792221..15794486-chr6:16130159..16132712,2	MCF-7	breast:
5	chr6:15792187..15794246-chr6:16049902..16052089,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11751408	0.81[ASN][1000 genomes]
rs12110659	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13198914	0.85[ASN][1000 genomes]
rs13211098	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13219486	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17477477	0.81[ASN][1000 genomes]
rs183397	0.95[EUR][1000 genomes]
rs191986	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2007855	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220890	0.84[EUR][1000 genomes]
rs220891	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs220894	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs220896	0.83[EUR][1000 genomes]
rs220901	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs220908	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs220917	0.83[EUR][1000 genomes]
rs220918	0.83[EUR][1000 genomes]
rs220919	0.84[EUR][1000 genomes]
rs220920	0.83[EUR][1000 genomes]
rs374814	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs398785	0.80[EUR][1000 genomes]
rs420350	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4348320	0.85[ASN][1000 genomes]
rs62394862	0.81[ASN][1000 genomes]
rs62396773	1.00[ASN][1000 genomes]
rs6925310	0.97[EUR][1000 genomes]
rs6937161	0.82[EUR][1000 genomes]
rs6941542	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74111	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9464828	1.00[ASN][1000 genomes]
rs9464829	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9464833	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9476913	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9476930	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476931	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9476932	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476935	0.81[EUR][1000 genomes]
rs9476936	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9476940	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9476941	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15790600-15793600	Enhancers	Fetal Intestine Small	intestine
2	chr6:15790600-15794600	Enhancers	Fetal Intestine Large	intestine
3	chr6:15790800-15793800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:15791000-15793800	Enhancers	Pancreas	Pancrea
5	chr6:15791000-15796400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr6:15791000-15798000	Enhancers	Fetal Muscle Leg	muscle
7	chr6:15791200-15792800	Enhancers	K562	blood
8	chr6:15791200-15793200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:15791200-15793800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:15791400-15794400	Enhancers	HMEC	breast
11	chr6:15791600-15794600	Enhancers	HSMMtube	muscle
12	chr6:15791600-15796400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:15791800-15793800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:15792000-15793000	Weak transcription	Aorta	Aorta
15	chr6:15792000-15793000	Enhancers	Fetal Muscle Trunk	muscle
16	chr6:15792000-15793200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:15792000-15794000	Enhancers	Psoas Muscle	Psoas
18	chr6:15792000-15794200	Enhancers	HSMM	muscle
19	chr6:15792000-15795400	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr6:15792000-15795400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:15792200-15793600	Weak transcription	Gastric	stomach
22	chr6:15792200-15796400	Weak transcription	Placenta	Placenta
23	chr6:15792600-15793000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:15792600-15793000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:15792600-15793000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:15792600-15794400	Weak transcription	Fetal Lung	lung

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