Variant report

Variant	rs420350
Chromosome Location	chr6:15763793-15763794
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15763498..15765929-chr6:15906777..15908450,2	MCF-7	breast:
2	chr6:15759762..15765920-chr6:16126887..16131377,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11965065	0.85[JPT][hapmap]
rs11970558	0.80[ASN][1000 genomes]
rs12110659	0.86[CHB][hapmap];0.90[CHD][hapmap];0.91[MEX][hapmap]
rs13202323	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13211098	0.86[CHB][hapmap]
rs16876807	0.85[JPT][hapmap]
rs17411020	0.82[ASN][1000 genomes]
rs17476541	0.82[ASN][1000 genomes]
rs183397	0.88[CEU][hapmap];0.83[YRI][hapmap]
rs1887605	0.88[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs191986	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1927577	0.81[EUR][1000 genomes]
rs1927580	0.85[ASN][1000 genomes]
rs1927581	0.83[ASN][1000 genomes]
rs2002087	0.91[ASN][1000 genomes]
rs2007855	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.92[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs220890	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs220891	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs220894	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs220895	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs220896	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs220897	0.96[EUR][1000 genomes]
rs220898	1.00[CEU][hapmap];0.89[TSI][hapmap];0.96[EUR][1000 genomes]
rs220899	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs220900	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs220901	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs220903	0.90[EUR][1000 genomes]
rs220904	0.96[EUR][1000 genomes]
rs220905	0.96[EUR][1000 genomes]
rs220907	0.94[EUR][1000 genomes]
rs220908	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs220911	0.96[EUR][1000 genomes]
rs220913	0.95[EUR][1000 genomes]
rs220914	0.94[EUR][1000 genomes]
rs220917	0.92[EUR][1000 genomes]
rs220918	0.92[EUR][1000 genomes]
rs220919	0.91[EUR][1000 genomes]
rs220920	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs374814	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs398785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs413080	1.00[CEU][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes]
rs56106152	0.80[ASN][1000 genomes]
rs56795754	0.86[ASN][1000 genomes]
rs62395049	0.83[ASN][1000 genomes]
rs6908590	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6914413	0.88[ASN][1000 genomes]
rs6925310	0.89[CEU][hapmap]
rs74111	0.92[ASW][hapmap];0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9349986	0.81[EUR][1000 genomes]
rs9464820	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9464821	1.00[CHB][hapmap]
rs9464828	0.86[CHB][hapmap]
rs9464829	0.89[CEU][hapmap]
rs9476903	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.80[ASN][1000 genomes]
rs9476904	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9476908	0.85[ASN][1000 genomes]
rs9476909	0.91[ASN][1000 genomes]
rs9476910	0.91[ASN][1000 genomes]
rs9476913	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9476930	0.89[CEU][hapmap];0.86[CHB][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9476932	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.83[AMR][1000 genomes]
rs9476941	0.86[CHB][hapmap];0.90[CHD][hapmap];0.91[MEX][hapmap]
rs990062	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2762581	chr6:15763793-15774802	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15759200-15770000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15759800-15764200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:15762200-15764000	Weak transcription	Stomach Mucosa	stomach
4	chr6:15762200-15782000	Weak transcription	Pancreas	Pancrea
5	chr6:15763200-15766000	Enhancers	Fetal Intestine Large	intestine
6	chr6:15763400-15765200	Enhancers	Liver	Liver
7	chr6:15763400-15765600	Enhancers	Fetal Intestine Small	intestine
8	chr6:15763600-15763800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:15763600-15764200	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr6:15763600-15764400	Enhancers	NHDF-Ad	bronchial
11	chr6:15763600-15764800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:15763600-15764800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:15763600-15764800	Enhancers	Adipose Nuclei	Adipose
14	chr6:15763600-15764800	Enhancers	Fetal Kidney	kidney
15	chr6:15763600-15765000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:15763600-15765000	Enhancers	Duodenum Mucosa	Duodenum
17	chr6:15763600-15765000	Enhancers	Fetal Lung	lung
18	chr6:15763600-15765600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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