Variant report

Variant	rs374814
Chromosome Location	chr6:15787639-15787640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15785339..15788012-chr6:15788868..15790666,2	MCF-7	breast:
2	chr6:15785790..15789204-chr6:16129110..16133019,3	K562	blood:
3	chr6:15786898..15789429-chr6:15792470..15795145,2	K562	blood:
4	chr6:15786648..15788654-chr6:16128086..16130862,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12110659	0.81[ASN][1000 genomes]
rs13198914	0.81[ASN][1000 genomes]
rs13202323	0.82[AMR][1000 genomes]
rs13211098	0.92[ASN][1000 genomes]
rs13219486	0.85[ASN][1000 genomes]
rs183397	0.94[EUR][1000 genomes]
rs191986	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2007855	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs220890	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs220891	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs220894	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs220896	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs220900	0.81[EUR][1000 genomes]
rs220901	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs220908	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs220917	0.84[EUR][1000 genomes]
rs220918	0.84[EUR][1000 genomes]
rs220919	0.84[EUR][1000 genomes]
rs220920	0.84[EUR][1000 genomes]
rs398785	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs420350	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4348320	0.81[ASN][1000 genomes]
rs62396773	0.96[ASN][1000 genomes]
rs6908590	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6925310	0.92[EUR][1000 genomes]
rs6941542	0.81[ASN][1000 genomes]
rs74111	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9464828	0.96[ASN][1000 genomes]
rs9464829	0.93[EUR][1000 genomes]
rs9464833	0.81[ASN][1000 genomes]
rs9476913	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9476930	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9476931	0.93[EUR][1000 genomes]
rs9476932	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9476936	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9476940	0.81[ASN][1000 genomes]
rs9476941	0.81[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15782400-15789200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:15785600-15791200	Weak transcription	Gastric	stomach

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