Variant report

Variant	rs220908
Chromosome Location	chr6:15778483-15778484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15776615..15778575-chr6:15781656..15783228,2	K562	blood:
2	chr6:15777570..15780327-chr6:16129636..16131455,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11970558	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13202323	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17411020	0.93[ASN][1000 genomes]
rs17476541	0.93[ASN][1000 genomes]
rs183397	0.81[EUR][1000 genomes]
rs191986	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1927580	0.90[ASN][1000 genomes]
rs1927581	0.88[ASN][1000 genomes]
rs2002087	0.97[ASN][1000 genomes]
rs2007855	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs220890	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs220891	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs220894	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs220895	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs220896	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs220897	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs220898	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs220899	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs220900	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs220901	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs220903	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs220904	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs220905	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs220907	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs220911	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs220913	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs220914	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs220917	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs220918	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs220919	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs220920	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs374814	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs398785	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs413080	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs420350	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56106152	0.85[ASN][1000 genomes]
rs56795754	0.91[ASN][1000 genomes]
rs62395049	0.88[ASN][1000 genomes]
rs62396773	0.80[ASN][1000 genomes]
rs6908590	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6914413	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6925310	0.82[EUR][1000 genomes]
rs74111	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9464820	0.97[ASN][1000 genomes]
rs9464828	0.80[ASN][1000 genomes]
rs9464829	0.80[EUR][1000 genomes]
rs9476903	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9476904	0.90[ASN][1000 genomes]
rs9476908	0.90[ASN][1000 genomes]
rs9476909	0.97[ASN][1000 genomes]
rs9476910	0.97[ASN][1000 genomes]
rs9476913	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9476930	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9476931	0.80[EUR][1000 genomes]
rs9476932	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs990062	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15762200-15782000	Weak transcription	Pancreas	Pancrea
2	chr6:15777000-15780200	Weak transcription	GM12878-XiMat	blood
3	chr6:15777800-15778600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:15778000-15778600	Enhancers	Gastric	stomach

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