Variant report

Variant	rs2002087
Chromosome Location	chr6:15761015-15761016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15761007..15761844-chr6:16167842..16168914,5	MCF-7	breast:
2	chr6:15757449..15762937-chr6:16128503..16130912,5	MCF-7	breast:
3	chr6:15759762..15765920-chr6:16126887..16131377,7	MCF-7	breast:
4	chr6:15760446..15762899-chr6:15770355..15772720,2	K562	blood:
5	chr6:15749973..15753066-chr6:15759762..15763032,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11970558	0.88[ASN][1000 genomes]
rs13202323	1.00[ASN][1000 genomes]
rs17411020	0.90[ASN][1000 genomes]
rs17476541	0.90[ASN][1000 genomes]
rs1887605	0.82[ASN][1000 genomes]
rs1927580	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1927581	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs220890	1.00[ASN][1000 genomes]
rs220891	1.00[ASN][1000 genomes]
rs220894	1.00[ASN][1000 genomes]
rs220896	1.00[ASN][1000 genomes]
rs220901	1.00[ASN][1000 genomes]
rs220908	0.97[ASN][1000 genomes]
rs398785	1.00[ASN][1000 genomes]
rs420350	0.91[ASN][1000 genomes]
rs56106152	0.88[ASN][1000 genomes]
rs56795754	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57424685	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61209665	0.85[AMR][1000 genomes]
rs62395049	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62396773	0.84[EUR][1000 genomes]
rs6914413	0.97[ASN][1000 genomes]
rs74111	0.90[ASN][1000 genomes]
rs9464820	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464828	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9476903	0.88[ASN][1000 genomes]
rs9476904	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9476908	0.94[ASN][1000 genomes]
rs9476909	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476910	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476913	1.00[ASN][1000 genomes]
rs990062	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15756200-15763600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:15759200-15770000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:15759800-15763600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:15759800-15764200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:15760200-15762400	Enhancers	Liver	Liver
6	chr6:15760600-15762200	Enhancers	Pancreas	Pancrea

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