Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:15757449..15762937-chr6:16128503..16130912,5	MCF-7	breast:
2	chr6:15759762..15765920-chr6:16126887..16131377,7	MCF-7	breast:
3	chr6:15760446..15762899-chr6:15770355..15772720,2	K562	blood:
4	chr6:15749973..15753066-chr6:15759762..15763032,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11970558	0.83[ASN][1000 genomes]
rs13202323	0.94[ASN][1000 genomes]
rs17411020	0.85[ASN][1000 genomes]
rs17476541	0.85[ASN][1000 genomes]
rs1927580	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1927581	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2002087	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs220890	0.94[ASN][1000 genomes]
rs220891	0.94[ASN][1000 genomes]
rs220894	0.94[ASN][1000 genomes]
rs220896	0.94[ASN][1000 genomes]
rs220901	0.94[ASN][1000 genomes]
rs220908	0.91[ASN][1000 genomes]
rs398785	0.94[ASN][1000 genomes]
rs420350	0.86[ASN][1000 genomes]
rs56106152	0.83[ASN][1000 genomes]
rs57424685	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61209665	0.83[AMR][1000 genomes]
rs62395049	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62396773	0.83[EUR][1000 genomes]
rs6914413	0.91[ASN][1000 genomes]
rs74111	0.85[ASN][1000 genomes]
rs9464820	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9464828	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9476903	0.83[ASN][1000 genomes]
rs9476904	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9476908	0.88[ASN][1000 genomes]
rs9476909	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9476910	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9476913	0.94[ASN][1000 genomes]
rs990062	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15756200-15763600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:15759200-15770000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:15759800-15763600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:15759800-15764200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:15761600-15763200	Weak transcription	Fetal Intestine Large	intestine
6	chr6:15762200-15763400	Weak transcription	Fetal Intestine Small	intestine
7	chr6:15762200-15764000	Weak transcription	Stomach Mucosa	stomach
8	chr6:15762200-15782000	Weak transcription	Pancreas	Pancrea
9	chr6:15762400-15763400	Weak transcription	Liver	Liver

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