Variant report

Variant	rs9476908
Chromosome Location	chr6:15756930-15756931
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15740904..15747364-chr6:15754114..15758056,5	K562	blood:
2	chr6:15749337..15756995-chr6:16127743..16131944,10	MCF-7	breast:
3	chr6:15755559..15757788-chr6:15768543..15770822,3	K562	blood:
4	chr6:15743873..15748458-chr6:15751737..15757129,6	MCF-7	breast:
5	chr6:15745864..15748782-chr6:15755149..15758056,3	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1109287	0.85[EUR][1000 genomes]
rs11970558	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13202323	0.94[ASN][1000 genomes]
rs17411020	0.84[ASN][1000 genomes]
rs17476541	0.84[ASN][1000 genomes]
rs1887605	0.82[ASN][1000 genomes]
rs1927577	0.86[EUR][1000 genomes]
rs1927579	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1927580	0.88[ASN][1000 genomes]
rs1927581	0.85[ASN][1000 genomes]
rs2002086	0.85[EUR][1000 genomes]
rs2002087	0.94[ASN][1000 genomes]
rs2093622	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2146594	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2181434	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs220890	0.94[ASN][1000 genomes]
rs220891	0.94[ASN][1000 genomes]
rs220894	0.94[ASN][1000 genomes]
rs220896	0.94[ASN][1000 genomes]
rs220901	0.94[ASN][1000 genomes]
rs220908	0.90[ASN][1000 genomes]
rs398785	0.94[ASN][1000 genomes]
rs420350	0.85[ASN][1000 genomes]
rs56106152	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56795754	0.88[ASN][1000 genomes]
rs62395049	0.85[ASN][1000 genomes]
rs6914413	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6922522	0.85[EUR][1000 genomes]
rs74111	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7758099	0.84[EUR][1000 genomes]
rs7774855	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9349986	0.86[EUR][1000 genomes]
rs9464820	0.94[ASN][1000 genomes]
rs9476903	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9476904	0.88[ASN][1000 genomes]
rs9476909	0.94[ASN][1000 genomes]
rs9476910	0.94[ASN][1000 genomes]
rs9476913	0.94[ASN][1000 genomes]
rs9476935	0.83[EUR][1000 genomes]
rs990062	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15755400-15758800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15755400-15759000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:15755400-15760000	Weak transcription	Pancreas	Pancrea
4	chr6:15756200-15763600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:15756800-15758800	Weak transcription	Liver	Liver

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