Variant report

Variant	rs1927579
Chromosome Location	chr6:15755618-15755619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15751973..15755914-chr6:16127948..16130980,5	MCF-7	breast:
2	chr6:15753115..15755889-chr6:16132034..16133691,2	K562	blood:
3	chr6:15753906..15756053-chr6:16127831..16129669,2	K562	blood:
4	chr6:15740904..15747364-chr6:15754114..15758056,5	K562	blood:
5	chr6:15750377..15752176-chr6:15753133..15755816,2	K562	blood:
6	chr6:15749337..15756995-chr6:16127743..16131944,10	MCF-7	breast:
7	chr6:15755559..15757788-chr6:15768543..15770822,3	K562	blood:
8	chr6:15743873..15748458-chr6:15751737..15757129,6	MCF-7	breast:
9	chr6:15745864..15748782-chr6:15755149..15758056,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1109287	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11970558	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs183397	0.87[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs1927576	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1927577	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2002086	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2093622	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2146594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181434	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220895	0.87[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220897	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs220898	0.93[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220899	0.94[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220900	0.94[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220903	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs220904	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220905	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220907	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs220911	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs220913	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs220914	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs220917	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs220918	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs220919	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs220920	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs387816	0.86[CHB][hapmap]
rs413080	0.93[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs552546	0.81[CHB][hapmap]
rs56106152	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6914413	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6922522	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6925310	0.86[CHB][hapmap]
rs7758099	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7774855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9349986	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9464822	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9464829	0.86[CHB][hapmap]
rs9476903	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9476908	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9476935	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15753800-15756400	Enhancers	NHDF-Ad	bronchial
2	chr6:15754400-15756600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:15754600-15756400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:15755000-15756000	Enhancers	Fetal Intestine Small	intestine
5	chr6:15755000-15756200	Enhancers	Fetal Intestine Large	intestine
6	chr6:15755000-15756600	Enhancers	Liver	Liver
7	chr6:15755400-15758800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:15755400-15759000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:15755400-15760000	Weak transcription	Pancreas	Pancrea
10	chr6:15755600-15755800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:15755600-15756400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:15755600-15756400	Enhancers	Fetal Lung	lung

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