Variant report

Variant	rs2093622
Chromosome Location	chr6:15749274-15749275
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15747967..15750269-chr6:15751385..15753044,2	K562	blood:
2	chr6:15745202..15755569-chr6:16127641..16133691,11	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1109287	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11970558	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1927576	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1927577	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1927579	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2002086	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2146594	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2181434	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs220895	0.81[AMR][1000 genomes]
rs220897	0.81[AMR][1000 genomes]
rs220898	0.81[AMR][1000 genomes]
rs220899	0.81[AMR][1000 genomes]
rs220900	0.80[AMR][1000 genomes]
rs220903	0.81[AMR][1000 genomes]
rs220904	0.81[AMR][1000 genomes]
rs220905	0.81[AMR][1000 genomes]
rs220907	0.81[AMR][1000 genomes]
rs220911	0.81[AMR][1000 genomes]
rs220913	0.81[AMR][1000 genomes]
rs220914	0.81[AMR][1000 genomes]
rs220917	0.81[AMR][1000 genomes]
rs220918	0.81[AMR][1000 genomes]
rs220919	0.81[AMR][1000 genomes]
rs220920	0.80[AMR][1000 genomes]
rs413080	0.80[AMR][1000 genomes]
rs56106152	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6914413	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6922522	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7758099	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7774855	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9349986	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9464822	0.81[EUR][1000 genomes]
rs9476903	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9476908	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9476935	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15746000-15755200	Weak transcription	H9 Cell Line	embryonic stem cell

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