Variant report

Variant	rs9464822
Chromosome Location	chr6:15759350-15759351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1109287	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs183397	0.82[ASN][1000 genomes]
rs1927576	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1927577	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1927579	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2002086	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2093622	0.81[EUR][1000 genomes]
rs2146594	0.93[ASN][1000 genomes]
rs2181434	0.93[ASN][1000 genomes]
rs220895	0.91[ASN][1000 genomes]
rs220897	0.89[ASN][1000 genomes]
rs220898	0.91[ASN][1000 genomes]
rs220899	0.91[ASN][1000 genomes]
rs220900	0.91[ASN][1000 genomes]
rs220903	0.89[ASN][1000 genomes]
rs220904	0.91[ASN][1000 genomes]
rs220905	0.91[ASN][1000 genomes]
rs220907	0.90[ASN][1000 genomes]
rs220911	0.90[ASN][1000 genomes]
rs220913	0.88[ASN][1000 genomes]
rs220914	0.89[ASN][1000 genomes]
rs220917	0.90[ASN][1000 genomes]
rs220918	0.90[ASN][1000 genomes]
rs220919	0.90[ASN][1000 genomes]
rs220920	0.88[ASN][1000 genomes]
rs413080	0.94[ASN][1000 genomes]
rs6922522	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7758099	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7774855	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9349986	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15755400-15760000	Weak transcription	Pancreas	Pancrea
2	chr6:15756200-15763600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:15758800-15759400	Weak transcription	Esophagus	oesophagus
4	chr6:15759000-15759600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:15759200-15770000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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