Variant report

Variant	rs2146594
Chromosome Location	chr6:15752566-15752567
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15751973..15755914-chr6:16127948..16130980,5	MCF-7	breast:
2	chr6:15749973..15753066-chr6:15759762..15763032,3	MCF-7	breast:
3	chr6:15747967..15750269-chr6:15751385..15753044,2	K562	blood:
4	chr6:15745202..15755569-chr6:16127641..16133691,11	K562	blood:
5	chr6:15749337..15756995-chr6:16127743..16131944,10	MCF-7	breast:
6	chr6:15743873..15748458-chr6:15751737..15757129,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1109287	0.83[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11970558	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12192181	0.94[ASW][hapmap];0.96[LWK][hapmap];0.88[MKK][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs12332848	0.90[AFR][1000 genomes]
rs12333139	0.90[AFR][1000 genomes]
rs183397	0.86[CHB][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs1927576	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1927577	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1927579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927585	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs2002086	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2093622	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2181434	0.89[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220895	0.86[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220897	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs220898	0.93[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220899	0.93[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220900	0.93[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220903	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs220904	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220905	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220907	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs220911	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs220913	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs220914	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs220917	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs220918	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs220919	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs220920	0.90[ASN][1000 genomes]
rs387816	0.86[CHB][hapmap]
rs413080	0.93[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs552546	0.86[CHB][hapmap]
rs56106152	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6914413	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6922522	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6925310	0.86[CHB][hapmap];0.94[CHD][hapmap];0.82[MEX][hapmap]
rs6935121	0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs7758099	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7774855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9349986	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9464822	0.93[ASN][1000 genomes]
rs9464829	0.86[CHB][hapmap];0.97[CHD][hapmap];0.91[MEX][hapmap]
rs9476903	1.00[CEU][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9476906	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9476908	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9476934	0.89[YRI][hapmap]
rs9476935	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15746000-15755200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:15751800-15753000	Weak transcription	K562	blood
3	chr6:15752200-15752600	Enhancers	Esophagus	oesophagus
4	chr6:15752200-15753200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:15752200-15753200	Enhancers	NHDF-Ad	bronchial
6	chr6:15752400-15754600	Weak transcription	Pancreas	Pancrea

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