Variant report

Variant	rs9476906
Chromosome Location	chr6:15753340-15753341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15751973..15755914-chr6:16127948..16130980,5	MCF-7	breast:
2	chr6:15752774..15753592-chr6:16183371..16184296,3	MCF-7	breast:
3	chr6:15753115..15755889-chr6:16132034..16133691,2	K562	blood:
4	chr6:15750377..15752176-chr6:15753133..15755816,2	K562	blood:
5	chr6:15752711..15753881-chr6:16128634..16130157,8	MCF-7	breast:
6	chr6:15753203..15753715-chr6:16129328..16129888,2	MCF-7	breast:
7	chr6:15745202..15755569-chr6:16127641..16133691,11	K562	blood:
8	chr6:15749337..15756995-chr6:16127743..16131944,10	MCF-7	breast:
9	chr6:15743873..15748458-chr6:15751737..15757129,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10949314	0.87[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs10949315	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1109287	0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs12192181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12332848	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12333139	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1927575	0.92[ASN][1000 genomes]
rs1927585	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs2146594	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs2149146	0.90[ASN][1000 genomes]
rs2181434	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs4712256	0.90[ASN][1000 genomes]
rs4712257	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs4715997	0.90[ASN][1000 genomes]
rs6911160	0.92[ASN][1000 genomes]
rs6922522	0.86[YRI][hapmap];0.80[AFR][1000 genomes]
rs6925866	0.92[ASN][1000 genomes]
rs6935121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs742386	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs742387	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7739472	0.90[ASN][1000 genomes]
rs7739977	0.90[ASN][1000 genomes]
rs7756956	0.90[ASN][1000 genomes]
rs9349986	0.83[YRI][hapmap]
rs9476911	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9476912	0.91[ASN][1000 genomes]
rs9476920	0.88[ASN][1000 genomes]
rs9476921	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9476922	0.90[ASN][1000 genomes]
rs9476923	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9476934	1.00[CEU][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15746000-15755200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:15752400-15754600	Weak transcription	Pancreas	Pancrea
3	chr6:15752600-15754400	Weak transcription	Esophagus	oesophagus
4	chr6:15753000-15753400	Enhancers	K562	blood
5	chr6:15753200-15753800	Weak transcription	NHDF-Ad	bronchial
6	chr6:15753200-15754200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links