Variant report

Variant	rs12333139
Chromosome Location	chr6:15760892-15760893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15757449..15762937-chr6:16128503..16130912,5	MCF-7	breast:
2	chr6:15759762..15765920-chr6:16126887..16131377,7	MCF-7	breast:
3	chr6:15760446..15762899-chr6:15770355..15772720,2	K562	blood:
4	chr6:15749973..15753066-chr6:15759762..15763032,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10949314	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10949315	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1109287	0.86[AFR][1000 genomes]
rs12192181	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12332848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1927575	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1927585	0.81[AFR][1000 genomes]
rs2146594	0.90[AFR][1000 genomes]
rs2149146	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4712256	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4715997	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6911160	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6922522	0.82[AFR][1000 genomes]
rs6925866	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6935121	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs742386	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs742387	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7739472	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7739977	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7756956	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9476906	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9476911	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476912	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9476920	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9476921	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9476922	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9476923	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15756200-15763600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:15759200-15770000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:15759800-15763600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:15759800-15764200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:15760200-15762400	Enhancers	Liver	Liver
6	chr6:15760600-15762200	Enhancers	Pancreas	Pancrea

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