Variant report

Variant	rs7739977
Chromosome Location	chr6:15777670-15777671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15776615..15778575-chr6:15781656..15783228,2	K562	blood:
2	chr6:15777570..15780327-chr6:16129636..16131455,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10949314	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10949315	0.99[ASN][1000 genomes]
rs12192181	0.82[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];0.88[ASN][1000 genomes]
rs12332848	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12333139	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1927575	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2007855	0.81[ASW][hapmap]
rs2149146	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs220890	0.85[YRI][hapmap]
rs220895	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs220896	0.87[ASW][hapmap];0.86[YRI][hapmap]
rs220897	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs220898	1.00[ASW][hapmap];0.98[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs220899	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs220900	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs220903	0.86[AFR][1000 genomes]
rs220904	0.94[AFR][1000 genomes]
rs220905	0.94[AFR][1000 genomes]
rs220907	0.94[AFR][1000 genomes]
rs220911	0.90[AFR][1000 genomes]
rs220913	0.92[AFR][1000 genomes]
rs220914	0.91[AFR][1000 genomes]
rs220917	0.87[AFR][1000 genomes]
rs220918	0.85[AFR][1000 genomes]
rs220919	0.89[AFR][1000 genomes]
rs413080	1.00[ASW][hapmap];0.93[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs420350	0.85[ASW][hapmap]
rs4712256	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712257	0.86[MEX][hapmap]
rs4715997	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911160	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6925866	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6935121	0.82[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs742386	0.99[ASN][1000 genomes]
rs742387	0.99[ASN][1000 genomes]
rs7739472	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756956	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476906	0.82[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs9476911	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9476912	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9476920	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9476921	0.99[ASN][1000 genomes]
rs9476922	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476923	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476934	0.86[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15762200-15782000	Weak transcription	Pancreas	Pancrea
2	chr6:15771200-15778000	Weak transcription	Gastric	stomach
3	chr6:15777000-15780200	Weak transcription	GM12878-XiMat	blood
4	chr6:15777600-15778400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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