Variant report

Variant	rs6935121
Chromosome Location	chr6:15748350-15748351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15747967..15750269-chr6:15751385..15753044,2	K562	blood:
2	chr6:15743873..15748458-chr6:15751737..15757129,6	MCF-7	breast:
3	chr6:15745864..15748782-chr6:15755149..15758056,3	K562	blood:
4	chr6:15745202..15755569-chr6:16127641..16133691,11	K562	blood:
5	chr6:15739654..15744085-chr6:15745601..15748866,4	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10949314	0.87[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs10949315	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1109287	0.82[YRI][hapmap]
rs12192181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12332848	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12333139	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1927575	0.90[ASN][1000 genomes]
rs2146594	0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs2149146	0.88[ASN][1000 genomes]
rs4712256	0.88[ASN][1000 genomes]
rs4712257	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs4715997	0.88[ASN][1000 genomes]
rs6911160	0.90[ASN][1000 genomes]
rs6925866	0.90[ASN][1000 genomes]
rs742386	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs742387	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7739472	0.88[ASN][1000 genomes]
rs7739977	0.88[ASN][1000 genomes]
rs7756956	0.88[ASN][1000 genomes]
rs9476906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9476911	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9476912	0.89[ASN][1000 genomes]
rs9476920	0.86[ASN][1000 genomes]
rs9476921	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9476922	0.88[ASN][1000 genomes]
rs9476923	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9476934	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15746000-15755200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:15747400-15748400	Enhancers	Liver	Liver

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