Variant report

Variant	rs387816
Chromosome Location	chr6:15803232-15803233
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15802544..15804608-chr6:15821645..15824118,2	K562	blood:
2	chr6:15793143..15797186-chr6:15800762..15804369,3	K562	blood:
3	chr6:15803207..15804959-chr6:16127890..16130092,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTNBP1-9	chr6:15803100-15803649	l_3122_chr6:15803099-15861147_testes

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1109287	0.86[CHB][hapmap]
rs12110659	1.00[CEU][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs13198914	0.94[EUR][1000 genomes]
rs13211098	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs13219486	0.95[EUR][1000 genomes]
rs183397	0.80[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs190084	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs191986	0.82[CEU][hapmap]
rs1927579	0.86[CHB][hapmap]
rs2146594	0.86[CHB][hapmap]
rs220895	0.86[CHB][hapmap]
rs220898	0.93[CHB][hapmap]
rs220899	0.93[CHB][hapmap]
rs220900	0.93[CHB][hapmap]
rs373949	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs387725	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs389746	0.85[CHB][hapmap]
rs413080	0.93[CHB][hapmap]
rs426166	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs552546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914658	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922522	0.86[CHB][hapmap]
rs6925310	0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[MEX][hapmap];0.80[EUR][1000 genomes]
rs6937161	0.96[EUR][1000 genomes]
rs6941542	0.96[EUR][1000 genomes]
rs74111	0.82[CEU][hapmap]
rs7774855	0.86[CHB][hapmap]
rs9349986	0.86[CHB][hapmap]
rs9464829	0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[MEX][hapmap];0.82[EUR][1000 genomes]
rs9464833	0.95[EUR][1000 genomes]
rs9476930	0.82[CEU][hapmap]
rs9476931	0.82[EUR][1000 genomes]
rs9476932	0.82[CEU][hapmap]
rs9476940	0.96[EUR][1000 genomes]
rs9476941	1.00[CEU][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs9476946	0.93[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs387816	FAM8A1	cis	parietal	SCAN
rs387816	RANBP9	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15800400-15816200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:15801800-15803400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:15802800-15803400	Enhancers	Fetal Kidney	kidney
4	chr6:15803200-15804000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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