Variant report

Variant	rs373949
Chromosome Location	chr6:15817628-15817629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15816794..15818788-chr6:15829882..15831801,2	K562	blood:
2	chr6:15811055..15813493-chr6:15816451..15819123,2	K562	blood:
3	chr6:15761041..15761911-chr6:15817000..15817770,2	MCF-7	breast:
4	chr6:15811610..15813493-chr6:15816696..15819123,2	K562	blood:
5	chr6:15761041..15761939-chr6:15817000..15817770,3	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11751408	0.96[ASN][1000 genomes]
rs12110659	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12216459	0.88[ASW][hapmap];1.00[YRI][hapmap]
rs13198914	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13207279	0.80[ASN][1000 genomes]
rs13211098	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13219486	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17477477	0.96[ASN][1000 genomes]
rs190084	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs191986	1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[MEX][hapmap]
rs2007855	1.00[CHB][hapmap];0.90[CHD][hapmap];0.81[MEX][hapmap]
rs220887	0.92[ASN][1000 genomes]
rs220896	0.86[CHB][hapmap];0.90[CHD][hapmap];0.81[MEX][hapmap]
rs387725	0.91[EUR][1000 genomes]
rs387816	0.84[CEU][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs398785	0.86[CHB][hapmap]
rs420350	0.86[CHB][hapmap];0.90[CHD][hapmap];0.81[MEX][hapmap]
rs426166	0.91[EUR][1000 genomes]
rs4348320	0.92[ASN][1000 genomes]
rs552546	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62394862	0.96[ASN][1000 genomes]
rs6914658	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6937161	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6941542	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74111	1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[MEX][hapmap]
rs9464820	0.86[CHB][hapmap]
rs9464821	0.82[CHB][hapmap]
rs9464828	1.00[CHB][hapmap]
rs9464833	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9476903	0.90[CHD][hapmap]
rs9476904	0.86[CHB][hapmap]
rs9476913	0.86[CHB][hapmap]
rs9476930	1.00[CHB][hapmap]
rs9476932	1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[MEX][hapmap]
rs9476940	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9476941	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs990062	0.86[CHB][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs373949	FAM8A1	cis	parietal	SCAN
rs373949	RANBP9	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15816200-15818600	Enhancers	Placenta	Placenta
2	chr6:15816400-15818200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:15816800-15818200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:15816800-15818800	Weak transcription	Spleen	Spleen
5	chr6:15817200-15818400	Enhancers	K562	blood
6	chr6:15817400-15818400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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