Variant report

Variant	rs9464828
Chromosome Location	chr6:15789191-15789192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15788511..15792316-chr6:15794070..15797091,4	K562	blood:
2	chr6:15785790..15789204-chr6:16129110..16133019,3	K562	blood:
3	chr6:15786898..15789429-chr6:15792470..15795145,2	K562	blood:
4	chr6:15785339..15788012-chr6:15788868..15790666,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11751408	0.81[ASN][1000 genomes]
rs12110659	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13198914	0.85[ASN][1000 genomes]
rs13211098	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13219486	0.89[ASN][1000 genomes]
rs17477477	0.81[ASN][1000 genomes]
rs191986	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1927580	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1927581	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2002087	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2007855	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs220896	0.86[CHB][hapmap]
rs220908	0.80[ASN][1000 genomes]
rs374814	0.96[ASN][1000 genomes]
rs398785	0.86[CHB][hapmap]
rs420350	0.86[CHB][hapmap]
rs4348320	0.85[ASN][1000 genomes]
rs56795754	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57424685	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62394862	0.81[ASN][1000 genomes]
rs62395049	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62396773	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908590	1.00[ASN][1000 genomes]
rs6941542	0.85[ASN][1000 genomes]
rs74111	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs9464820	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9464821	0.82[CHB][hapmap];0.85[YRI][hapmap]
rs9464833	0.85[ASN][1000 genomes]
rs9476904	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9476909	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9476910	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9476913	0.86[CHB][hapmap]
rs9476930	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9476932	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9476936	0.96[ASN][1000 genomes]
rs9476940	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9476941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs990062	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15782400-15789200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:15785600-15791200	Weak transcription	Gastric	stomach

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