Variant report

Variant	rs57424685
Chromosome Location	chr6:15754177-15754178
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15751973..15755914-chr6:16127948..16130980,5	MCF-7	breast:
2	chr6:15753115..15755889-chr6:16132034..16133691,2	K562	blood:
3	chr6:15753906..15756053-chr6:16127831..16129669,2	K562	blood:
4	chr6:15740904..15747364-chr6:15754114..15758056,5	K562	blood:
5	chr6:15750377..15752176-chr6:15753133..15755816,2	K562	blood:
6	chr6:15745202..15755569-chr6:16127641..16133691,11	K562	blood:
7	chr6:15749337..15756995-chr6:16127743..16131944,10	MCF-7	breast:
8	chr6:15743873..15748458-chr6:15751737..15757129,6	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1927580	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1927581	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2002087	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56795754	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61209665	0.85[AMR][1000 genomes]
rs62395049	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62396773	0.84[EUR][1000 genomes]
rs9464820	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9464828	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9476904	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9476909	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9476910	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs990062	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15746000-15755200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:15752400-15754600	Weak transcription	Pancreas	Pancrea
3	chr6:15752600-15754400	Weak transcription	Esophagus	oesophagus
4	chr6:15753200-15754200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:15753400-15754400	Weak transcription	K562	blood
6	chr6:15753800-15756400	Enhancers	NHDF-Ad	bronchial
7	chr6:15754000-15755400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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