Variant report

Variant	rs9476941
Chromosome Location	chr6:15803938-15803939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15802544..15804608-chr6:15821645..15824118,2	K562	blood:
2	chr6:15793143..15797186-chr6:15800762..15804369,3	K562	blood:
3	chr6:15803207..15804959-chr6:16127890..16130092,2	K562	blood:
4	chr6:15691223..15691812-chr6:15803377..15804019,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11751408	0.96[ASN][1000 genomes]
rs12110659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198914	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207279	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13211098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13219486	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17477477	0.96[ASN][1000 genomes]
rs183397	0.81[CEU][hapmap]
rs190084	0.95[EUR][1000 genomes]
rs191986	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[ASN][1000 genomes]
rs2007855	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[ASN][1000 genomes]
rs220887	0.92[ASN][1000 genomes]
rs220896	0.86[CHB][hapmap];0.90[CHD][hapmap];0.91[MEX][hapmap]
rs373949	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs374814	0.81[ASN][1000 genomes]
rs387725	0.94[EUR][1000 genomes]
rs387816	1.00[CEU][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs398785	0.86[CHB][hapmap]
rs420350	0.86[CHB][hapmap];0.90[CHD][hapmap];0.91[MEX][hapmap]
rs426166	0.97[EUR][1000 genomes]
rs4348320	1.00[ASN][1000 genomes]
rs552546	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs62394862	0.96[ASN][1000 genomes]
rs62396773	0.85[ASN][1000 genomes]
rs6908590	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6914658	0.95[EUR][1000 genomes]
rs6925310	0.82[CEU][hapmap]
rs6937161	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6941542	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74111	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[MEX][hapmap]
rs9464820	0.86[CHB][hapmap]
rs9464821	0.82[CHB][hapmap]
rs9464828	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9464829	0.82[CEU][hapmap]
rs9464833	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476903	0.90[CHD][hapmap];0.86[MEX][hapmap]
rs9476904	0.86[CHB][hapmap]
rs9476913	0.86[CHB][hapmap]
rs9476930	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9476932	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9476936	0.82[ASN][1000 genomes]
rs9476940	1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs990062	0.86[CHB][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9476941	RANBP9	cis	parietal	SCAN
rs9476941	FAM8A1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15800400-15816200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:15803200-15804000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:15803400-15804600	Weak transcription	Fetal Kidney	kidney
4	chr6:15803800-15809200	Weak transcription	Fetal Brain Male	brain

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