Variant report

Variant	rs68169394
Chromosome Location	chr6:15740061-15740062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11965065	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11966189	0.90[ASN][1000 genomes]
rs16876807	0.90[ASN][1000 genomes]
rs16876830	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56801765	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57856891	0.90[ASN][1000 genomes]
rs60860775	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6930152	0.90[ASN][1000 genomes]
rs73375448	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73375450	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73375453	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73375455	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73375461	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15737000-15745400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:15739200-15740600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:15739800-15740600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:15740000-15740600	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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