Variant report

Variant	rs60860775
Chromosome Location	chr6:15735286-15735287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11965065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966189	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16876807	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16876830	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56801765	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57492943	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57856891	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60357706	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs68169394	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6930152	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375448	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375450	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375455	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375461	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7753185	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9791290	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15721200-15736200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:15731200-15736000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:15731400-15735600	Weak transcription	Fetal Intestine Large	intestine
4	chr6:15732600-15735800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:15733400-15737600	Enhancers	Fetal Heart	heart
6	chr6:15733800-15736800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:15733800-15736800	Enhancers	Fetal Thymus	thymus
8	chr6:15733800-15736800	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:15734000-15736400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:15734200-15735800	Weak transcription	Fetal Stomach	stomach
11	chr6:15734200-15736600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:15734400-15736000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:15734600-15735800	Weak transcription	Primary T cells from cord blood	blood
14	chr6:15734600-15735800	Enhancers	K562	blood
15	chr6:15734800-15737600	Enhancers	Fetal Intestine Small	intestine
16	chr6:15735000-15735800	Weak transcription	Gastric	stomach
17	chr6:15735000-15735800	Weak transcription	Right Atrium	heart
18	chr6:15735000-15736000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:15735200-15735800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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