Variant report

Variant	esv3380574
Chromosome Location	chr13:86574651-86576749
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK5-26	chr13:86575237-86575286	NONHSAT034572

Extended variants
information (count: 38 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs116582579	chr13:86575262-86575263	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs71442113	chr13:86575828-86575829	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs7329157	chr13:86575869-86575870	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs544483251	chr13:86575880-86575881	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs76386237	chr13:86575885-86575886	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs529928255	chr13:86575915-86575916	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs371674026	chr13:86575931-86575932	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs143054175	chr13:86575941-86575942	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs560677629	chr13:86576061-86576062	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs181225318	chr13:86576071-86576072	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs146135058	chr13:86576075-86576076	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs564112794	chr13:86576090-86576091	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs115906784	chr13:86576130-86576131	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs35330889	chr13:86576133-86576134	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs568641589	chr13:86576136-86576137	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs7330120	chr13:86576154-86576155	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs547631643	chr13:86576188-86576189	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs566572631	chr13:86576194-86576195	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs148772194	chr13:86576216-86576217	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs561165232	chr13:86576253-86576254	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs142377846	chr13:86576257-86576258	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs540560453	chr13:86576264-86576265	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs576947186	chr13:86576317-86576318	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs537420515	chr13:86576366-86576367	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs35611603	chr13:86576394-86576395	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs574635186	chr13:86576459-86576460	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs12872931	chr13:86576465-86576466	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs9602927	chr13:86576467-86576468	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs150857710	chr13:86576490-86576491	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs180896994	chr13:86576491-86576492	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs564227624	chr13:86576507-86576508	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs562590170	chr13:86576535-86576536	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs186077444	chr13:86576545-86576546	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs375425140	chr13:86576575-86576576	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs190985220	chr13:86576659-86576660	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs562411835	chr13:86576686-86576687	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs529512523	chr13:86576726-86576727	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs547990592	chr13:86576732-86576733	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Cancer	17160897	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Bipolar disorder	19114987	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86575800-86577800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:86576600-86578000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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