Variant report

Variant	rs71442113
Chromosome Location	chr13:86575828-86575829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12860968	1.00[AMR][1000 genomes]
rs12866556	1.00[AMR][1000 genomes]
rs12872436	1.00[AMR][1000 genomes]
rs12872520	1.00[AMR][1000 genomes]
rs12872931	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875762	1.00[AMR][1000 genomes]
rs12875825	1.00[AMR][1000 genomes]
rs12875855	1.00[AMR][1000 genomes]
rs12875981	1.00[AMR][1000 genomes]
rs34154179	1.00[AMR][1000 genomes]
rs34248570	1.00[AMR][1000 genomes]
rs34412004	1.00[AMR][1000 genomes]
rs34471088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34645438	0.89[EUR][1000 genomes]
rs34793434	1.00[AMR][1000 genomes]
rs34829492	1.00[AMR][1000 genomes]
rs34959526	1.00[AMR][1000 genomes]
rs34979736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35044661	1.00[AMR][1000 genomes]
rs35178632	1.00[AMR][1000 genomes]
rs35275134	1.00[AMR][1000 genomes]
rs35330889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35340129	1.00[AMR][1000 genomes]
rs35363096	1.00[AMR][1000 genomes]
rs35527585	1.00[AMR][1000 genomes]
rs35611603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71442109	1.00[AMR][1000 genomes]
rs71442110	1.00[AMR][1000 genomes]
rs71442111	1.00[AMR][1000 genomes]
rs71445358	1.00[AMR][1000 genomes]
rs71445359	1.00[AMR][1000 genomes]
rs9602886	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900734	chr13:86415632-86911159	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900737	chr13:86429834-86639464	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900738	chr13:86449302-86628241	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv900739	chr13:86449302-86736910	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv900740	chr13:86449302-86911159	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv900741	chr13:86461429-86959695	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv900742	chr13:86463135-86618098	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv900743	chr13:86477773-86581867	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv900746	chr13:86498444-86618098	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv900749	chr13:86529275-86628241	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv900750	chr13:86529275-86740599	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv900751	chr13:86533687-86605288	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1035427	chr13:86539848-86588087	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv456054	chr13:86542148-86575869	Enhancers Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv562612	chr13:86542148-86575869	Enhancers Active TSS Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv832669	chr13:86543824-86697234	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv900752	chr13:86545903-86949574	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv562613	chr13:86551371-86620040	Flanking Active TSS Enhancers Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
19	nsv900753	chr13:86551371-86639464	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv471163	chr13:86558900-86620039	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
21	nsv900754	chr13:86558900-86639464	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv900755	chr13:86570412-86605288	Enhancers Active TSS Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
23	esv3380574	chr13:86574651-86576749	Enhancers	lncRNA	n/a	inside rSNPs	diseases
24	esv3437203	chr13:86575201-86576249	Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86575800-86577800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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