Variant report

Variant	rs12872520
Chromosome Location	chr13:86479614-86479615
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12860968	1.00[AMR][1000 genomes]
rs12863734	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12866556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12866793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12872436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12872931	1.00[AMR][1000 genomes]
rs12875762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34065887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34154179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34248570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34412004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34471088	1.00[AMR][1000 genomes]
rs34489070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34686215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34793434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34829492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34880475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34959526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34979736	1.00[AMR][1000 genomes]
rs35044661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35119660	1.00[EUR][1000 genomes]
rs35178632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35275134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35330889	1.00[AMR][1000 genomes]
rs35335059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35340129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35342386	1.00[EUR][1000 genomes]
rs35363096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35363918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35527585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35611603	1.00[AMR][1000 genomes]
rs35626195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35712436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35784516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67478524	1.00[EUR][1000 genomes]
rs68059274	1.00[EUR][1000 genomes]
rs71440184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71440185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71442109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71442110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71442111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71442113	1.00[AMR][1000 genomes]
rs71445358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71445359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9602886	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900734	chr13:86415632-86911159	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900735	chr13:86426757-86545903	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900736	chr13:86429834-86529275	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900737	chr13:86429834-86639464	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv456053	chr13:86448054-86551371	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv562610	chr13:86448054-86551371	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1050020	chr13:86449037-86499673	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	nsv900738	chr13:86449302-86628241	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv900739	chr13:86449302-86736910	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv900740	chr13:86449302-86911159	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv900741	chr13:86461429-86959695	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv524758	chr13:86463135-86568584	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv900742	chr13:86463135-86618098	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv900743	chr13:86477773-86581867	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86479600-86483400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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