Variant report

Variant	rs71440185
Chromosome Location	chr13:86373531-86373532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:85624379..85624909-chr13:86373073..86373588,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12860968	1.00[AMR][1000 genomes]
rs12863734	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12866556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12866793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12872436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12872520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34065887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34154179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34248570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34412004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34489070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34686215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34793434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34829492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34880475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34959526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35044661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35119660	1.00[EUR][1000 genomes]
rs35178632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35275134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35335059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35340129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35342386	1.00[EUR][1000 genomes]
rs35363096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35363918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35527585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35626195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35712436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35784516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67478524	1.00[EUR][1000 genomes]
rs68059274	1.00[EUR][1000 genomes]
rs71440184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71442109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71442110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71442111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71445358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71445359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9602886	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3437679	chr13:86373151-86376849	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86370000-86373600	Active TSS	Fetal Intestine Small	intestine
2	chr13:86370200-86373600	Active TSS	Fetal Intestine Large	intestine
3	chr13:86370400-86373600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:86370400-86373600	Active TSS	Fetal Stomach	stomach
5	chr13:86370600-86373600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr13:86370800-86373800	Active TSS	Stomach Smooth Muscle	stomach
7	chr13:86371000-86373600	Active TSS	Placenta Amnion	Placenta Amnion
8	chr13:86371000-86373600	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr13:86371200-86373600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:86371200-86373600	Active TSS	Fetal Lung	lung
11	chr13:86371400-86373600	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr13:86371600-86373600	Active TSS	Fetal Muscle Leg	muscle
13	chr13:86371600-86373800	Active TSS	A549	lung
14	chr13:86372200-86373600	Active TSS	Fetal Muscle Trunk	muscle
15	chr13:86372200-86373600	Flanking Active TSS	NHEK	skin
16	chr13:86372400-86373600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr13:86372400-86373600	Active TSS	Brain Anterior Caudate	brain
18	chr13:86372600-86373600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr13:86372600-86373600	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr13:86372600-86373800	ZNF genes & repeats	Fetal Brain Male	brain
21	chr13:86372800-86373600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr13:86372800-86373600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr13:86372800-86373800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr13:86373000-86373600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr13:86373000-86373600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr13:86373000-86373800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:86373000-86373800	Flanking Active TSS	Fetal Kidney	kidney
28	chr13:86373000-86373800	Enhancers	Stomach Mucosa	stomach
29	chr13:86373200-86373600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr13:86373200-86373600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
31	chr13:86373200-86373600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr13:86373200-86373600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
33	chr13:86373200-86373600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chr13:86373200-86373600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
35	chr13:86373200-86373600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr13:86373200-86373600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr13:86373200-86373600	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr13:86373200-86373600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr13:86373200-86373600	Flanking Active TSS	HMEC	breast
40	chr13:86373200-86373800	Enhancers	Brain Hippocampus Middle	brain
41	chr13:86373200-86373800	Enhancers	Colon Smooth Muscle	Colon
42	chr13:86373200-86373800	Enhancers	NH-A	brain
43	chr13:86373200-86374000	Enhancers	Hela-S3	cervix
44	chr13:86373400-86373600	Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr13:86373400-86373600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr13:86373400-86373600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr13:86373400-86373600	Enhancers	Brain Substantia Nigra	brain
48	chr13:86373400-86373600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
49	chr13:86373400-86373800	Enhancers	Brain Angular Gyrus	brain

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