Variant report

Variant	rs34686215
Chromosome Location	chr13:86375351-86375352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr13:86374990-86375355	SH-SY5Y	brain:	n/a	n/a

Variant related genes	Relation type
SLITRK6	TF binding region

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12860968	1.00[AMR][1000 genomes]
rs12863734	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12866556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12866793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12872436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12872520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34065887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34154179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34248570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34412004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34489070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34793434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34829492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34880475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34959526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35044661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35119660	1.00[EUR][1000 genomes]
rs35178632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35275134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35335059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35340129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35342386	1.00[EUR][1000 genomes]
rs35363096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35363918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35527585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35626195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35712436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35784516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67478524	1.00[EUR][1000 genomes]
rs68059274	1.00[EUR][1000 genomes]
rs71440184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71440185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71442109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71442110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71442111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71445358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71445359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9602886	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3437679	chr13:86373151-86376849	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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