Variant report

Variant	rs34880475
Chromosome Location	chr13:86371344-86371345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:86164717..86166503-chr13:86370230..86372028,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12860968	1.00[AMR][1000 genomes]
rs12863734	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12866556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12866793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12872436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12872520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34065887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34154179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34248570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34412004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34489070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34686215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34793434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34829492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34959526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35044661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35119660	1.00[EUR][1000 genomes]
rs35178632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35275134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35335059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35340129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35342386	1.00[EUR][1000 genomes]
rs35363096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35363918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35527585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35626195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35712436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35784516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67478524	1.00[EUR][1000 genomes]
rs68059274	1.00[EUR][1000 genomes]
rs71440184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71440185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71442109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71442110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71442111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71445358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71445359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9602886	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86335000-86372800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:86367000-86372200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr13:86368800-86371400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr13:86370000-86371600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:86370000-86373400	Active TSS	Duodenum Mucosa	Duodenum
6	chr13:86370000-86373600	Active TSS	Fetal Intestine Small	intestine
7	chr13:86370200-86373600	Active TSS	Fetal Intestine Large	intestine
8	chr13:86370400-86373600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:86370400-86373600	Active TSS	Fetal Stomach	stomach
10	chr13:86370600-86373600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr13:86370800-86372000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr13:86370800-86373800	Active TSS	Stomach Smooth Muscle	stomach
13	chr13:86371000-86373200	Active TSS	HMEC	breast
14	chr13:86371000-86373400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr13:86371000-86373600	Active TSS	Placenta Amnion	Placenta Amnion
16	chr13:86371000-86373600	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr13:86371200-86373400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr13:86371200-86373600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr13:86371200-86373600	Active TSS	Fetal Lung	lung

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