Variant report

Variant	rs12863734
Chromosome Location	chr13:86370571-86370572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:86164717..86166503-chr13:86370230..86372028,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12860968	0.87[AMR][1000 genomes]
rs12866556	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12866793	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12872436	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12872520	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875762	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875825	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875855	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875981	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34065887	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34248570	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34412004	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34489070	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34686215	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34793434	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34829492	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34880475	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34959526	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35119660	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35178632	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35275134	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35335059	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35340129	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35342386	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35363096	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35363918	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35527585	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35626195	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35712436	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35784516	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67478524	1.00[EUR][1000 genomes]
rs68059274	1.00[EUR][1000 genomes]
rs71440184	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71440185	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71442109	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71442110	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71442111	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71445358	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71445359	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9602886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86335000-86372800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:86362400-86371000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr13:86366400-86370600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:86367000-86372200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr13:86367200-86370800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr13:86367200-86371200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr13:86368800-86371400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr13:86369600-86370600	ZNF genes & repeats	Fetal Lung	lung
9	chr13:86369800-86370600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr13:86370000-86371000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr13:86370000-86371600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr13:86370000-86373400	Active TSS	Duodenum Mucosa	Duodenum
13	chr13:86370000-86373600	Active TSS	Fetal Intestine Small	intestine
14	chr13:86370200-86373600	Active TSS	Fetal Intestine Large	intestine
15	chr13:86370400-86370800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr13:86370400-86373600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr13:86370400-86373600	Active TSS	Fetal Stomach	stomach

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