Variant report

Variant	esv3391200
Chromosome Location	chr7:108501216-108502064
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:108501024..108502651-chr7:108503799..108506089,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs79417634	chr7:108501444-108501445	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs371939728	chr7:108501446-108501447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs67348405	chr7:108501447-108501448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs572533823	chr7:108501495-108501496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs541639890	chr7:108501540-108501541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs560794219	chr7:108501543-108501544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs199845223	chr7:108501544-108501545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs200625549	chr7:108501545-108501546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs374089020	chr7:108501643-108501644	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs147994865	chr7:108501714-108501715	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs532184020	chr7:108501742-108501743	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs552482145	chr7:108501761-108501762	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs565990697	chr7:108501778-108501779	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs538403343	chr7:108501819-108501820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs56897220	chr7:108501904-108501905	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs76351567	chr7:108501928-108501929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs141950111	chr7:108501929-108501930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs536756074	chr7:108501987-108501988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs146851292	chr7:108502000-108502001	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs569707620	chr7:108502014-108502015	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs538682437	chr7:108502038-108502039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs181644586	chr7:108502054-108502055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	17053054	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Melanoma	17363583	CNVD
Myelofibrosis	22110671	CNVD
Squamous cell cancer	20885788	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	16397240	CNVD
Biliary cancer	19435499	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	23792589	CNVD
Adenocarcinoma	21044232	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Autism	19401682	CNVD
Non-small cell lung cancer	19889201	CNVD
Acute myeloid leukemia	18000384	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Metastatic melanoma	18483359	CNVD
Autism	18414403	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Melanoma	19188590	CNVD
small cell lung cancer	20016488	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108501400-108501600	Weak transcription	Right Ventricle	heart
2	chr7:108501600-108501800	Enhancers	Right Ventricle	heart
3	chr7:108501800-108503200	Weak transcription	Right Ventricle	heart

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