Variant report
| Variant | esv3393364 |
|---|---|
| Chromosome Location | chrY:20284414-20286612 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CDY2B-9 | chrY:20285560-20285685 | NONHSAT139562 |
| 2 | lnc-CDY2B-9 | chrY:20284895-20284986 | NONHSAT139562 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000244646 | TF binding region |
| USP9YP16 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs111470346 | chrY:20285577-20285578 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:50)
| Disease | PMID | Source |
|---|---|---|
| Testicular failure | 20966427 | CNVD |
| Honadal dysgenesis | 22138850 | CNVD |
| severe oligozoospermia and azoospermia | 19731213 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| infertility | 21210740 | CNVD |
| Klinefelter syndrome | 17968468 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| infertility | 20668881 | CNVD |
| Klinefelter syndrome | 20603808 | CNVD |
| Meiotic abnormalities | 17428878 | CNVD |
| Oligozoospermia | 20576090 | CNVD |
| Azoospermia | 16445861 | CNVD |
| Cryptorchidism | 16988323 | CNVD |
| Non-syndromic sensorineural hearing loss | 17409464 | CNVD |
| infertile | 20603812 | CNVD |
| infertile | 22120929 | CNVD |
| infertile | 19369647 | CNVD |
| severe oligozoospermia and azoospermia | 21887237 | CNVD |
| spermatozoa with elongated heads | 17208942 | CNVD |
| Azoospermia | 17187159 | CNVD |
| Oligozoospermia | 17187159 | CNVD |
| infertile | 19440834 | CNVD |
| Non-syndromic sensorineural hearing loss | 18496225 | CNVD |
| infertility | 21340528 | CNVD |
| Klinefelter syndrome | 16612480 | CNVD |
| infertile | 16612480 | CNVD |
| Infertility | 16469004 | CNVD |
| Recurrent pregnancy loss | 20943704 | CNVD |
| infertile | 16469004 | CNVD |
| infertility | 18832950 | CNVD |
| Maturation arrest | 22820855 | CNVD |
| Azoospermia | 16709604 | CNVD |
| Astheno-teratozoospermia syndrome | 22371775 | CNVD |
| Asthenozoospermia | 22371775 | CNVD |
| Azoospermia | 22371775 | CNVD |
| Oligoasthenoteratozoospermia | 22371775 | CNVD |
| Oligoasthenozoospermia | 22371775 | CNVD |
| Oligoteratozoospermia | 22371775 | CNVD |
| Teratozoospermia | 22371775 | CNVD |
| infertile | 17554051 | CNVD |
| Klinefelter syndrome | 20805717 | CNVD |
| subfertile | 22371775 | CNVD |
| infertile | 19966830 | CNVD |
| Azoospermia | 20823911 | CNVD |
| Non-syndromic sensorineural hearing loss | 18200580 | CNVD |
| infertile oligozoospermic | 17712493 | CNVD |
| Hereditary coagulopathy | 21993689 | CNVD |
| Honadal dysgenesis | 21048976 | CNVD |
| Breast cancer | 21045282 | CNVD |
Chromatin state (count:0 , 50 per page) page:
| No data |
