Variant report
| Variant | rs111470346 |
|---|---|
| Chromosome Location | chrY:20285577-20285578 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CDY2B-9 | chrY:20285560-20285685 | NONHSAT139562 |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3323847 | chrY:19761870-20363015 | ZNF genes & repeats | TF binding regionlncRNA | 31 gene(s) | inside rSNPs | n/a |
| 2 | esv3443758 | chrY:20029498-20340872 | ZNF genes & repeats | TF binding regionlncRNA | 15 gene(s) | inside rSNPs | n/a |
| 3 | nsv869477 | chrY:20063342-20961810 | Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandlncRNA | 46 gene(s) | inside rSNPs | diseases |
| 4 | nsv469717 | chrY:20239119-20402583 | Inactive region | TF binding regionlncRNA | 10 gene(s) | inside rSNPs | n/a |
| 5 | nsv482378 | chrY:20239119-20402583 | Inactive region | TF binding regionlncRNA | 10 gene(s) | inside rSNPs | n/a |
| 6 | esv3393364 | chrY:20284414-20286612 | Inactive region | TF binding regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
