Variant report

Variant	esv3443758
Chromosome Location	chrY:20029498-20340872
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:476)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:20)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:476 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chrY:20311710-20311780	LNCaP	prostate:	n/a	n/a
2	CTCF	chrY:20283867-20283943	GM20000	blood:	n/a	n/a
3	CTCF	chrY:20308447-20308692	LNCaP	prostate:	n/a	n/a
4	CTCF	chrY:20289950-20290022	GM10248	blood:	n/a	n/a
5	CTCF	chrY:20095601-20095714	GM20000	blood:	n/a	n/a
6	CTCF	chrY:20295820-20295834	ProgFib	skin:	n/a	n/a
7	CTCF	chrY:20338649-20338671	GM10266	blood:	n/a	n/a
8	CTCF	chrY:20031326-20031385	GM10248	blood:	n/a	n/a
9	CTCF	chrY:20247893-20248143	LNCaP	prostate:	n/a	n/a
10	CTCF	chrY:20117549-20117594	LNCaP	prostate:	n/a	n/a
11	CTCF	chrY:20114767-20114839	HepG2	liver:	n/a	n/a
12	CTCF	chrY:20110171-20110216	GM20000	blood:	n/a	n/a
13	CTCF	chrY:20031593-20031607	Medullo	brain:	n/a	n/a
14	CTCF	chrY:20089741-20089794	A549	lung:	n/a	n/a
15	CTCF	chrY:20247952-20248087	Pancreas_OC	pancreas:	n/a	n/a
16	CTCF	chrY:20338088-20338269	H1-hESC	embryonic stem cell:	n/a	n/a
17	CTCF	chrY:20235457-20235638	Medullo	brain:	n/a	n/a
18	CTCF	chrY:20105202-20105246	GM10266	blood:	n/a	n/a
19	CTCF	chrY:20137060-20137091	GM10248	blood:	n/a	n/a
20	CTCF	chrY:20253746-20253808	GM20000	blood:	n/a	n/a
21	CTCF	chrY:20242093-20242329	Medullo	brain:	n/a	n/a
22	CTCF	chrY:20135873-20136005	GM20000	blood:	n/a	n/a
23	CTCF	chrY:20321841-20321911	ProgFib	skin:	n/a	n/a
24	CTCF	chrY:20308317-20308734	A549	lung:	n/a	n/a
25	CTCF	chrY:20133023-20133079	GM10266	blood:	n/a	n/a
26	CTCF	chrY:20338170-20338243	GM19239	blood:	n/a	n/a
27	CTCF	chrY:20036138-20036229	GM20000	blood:	n/a	n/a
28	CTCF	chrY:20329645-20329711	GM10248	blood:	n/a	n/a
29	CTCF	chrY:20333929-20333975	Medullo	brain:	n/a	n/a
30	CTCF	chrY:20035580-20035647	GM10266	blood:	n/a	n/a
31	CTCF	chrY:20133524-20133622	GM20000	blood:	n/a	n/a
32	CTCF	chrY:20338082-20338293	GM10248	blood:	n/a	n/a
33	CTCF	chrY:20292637-20292677	Medullo	brain:	n/a	n/a
34	CTCF	chrY:20257050-20257074	HUVEC	blood vessel:	n/a	n/a
35	CTCF	chrY:20292220-20292225	A549	lung:	n/a	n/a
36	CTCF	chrY:20208566-20208644	Medullo	brain:	n/a	n/a
37	CTCF	chrY:20338030-20338301	A549	lung:	n/a	n/a
38	CTCF	chrY:20080995-20081058	GM10248	blood:	n/a	n/a
39	CTCF	chrY:20308432-20308703	LNCaP	prostate:	n/a	n/a
40	CTCF	chrY:20315870-20315895	Pancreas_OC	pancreas:	n/a	n/a
41	CTCF	chrY:20078633-20078758	GM10248	blood:	n/a	n/a
42	CTCF	chrY:20094824-20094895	GM10248	blood:	n/a	n/a
43	CTCF	chrY:20239610-20239658	LNCaP	prostate:	n/a	n/a
44	CTCF	chrY:20338144-20338272	HUVEC	blood vessel:	n/a	n/a
45	CTCF	chrY:20140841-20140860	LNCaP	prostate:	n/a	n/a
46	CTCF	chrY:20210688-20210746	LNCaP	prostate:	n/a	n/a
47	CTCF	chrY:20280549-20280702	GM20000	blood:	n/a	n/a
48	CTCF	chrY:20254053-20254094	HUVEC	blood vessel:	n/a	n/a
49	CTCF	chrY:20038989-20039090	GM20000	blood:	n/a	n/a
50	CTCF	chrY:20114736-20114792	GM10266	blood:	n/a	n/a

No data

(count:20 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDY2A-3	chrY:20063942-20065380	NONHSAT139555
2	lnc-CDY2B-5	chrY:20108912-20109132	NONHSAT139557
3	lnc-CDY2B-9	chrY:20285560-20285685	NONHSAT139562
4	lnc-CDY2A-6	chrY:20278947-20279105	NONHSAT139560
5	lnc-CDY2A-2	chrY:20102823-20102907	NONHSAT139556
6	lnc-CDY2B-9	chrY:20284895-20284986	NONHSAT139562
7	lnc-CDY2A-2	chrY:20105048-20105140	NONHSAT139556
8	lnc-CDY2A-2	chrY:20096229-20096449	NONHSAT139556
9	lnc-CDY2B-3	chrY:20033289-20033510	NONHSAT139554
10	lnc-CDY2A-4	chrY:20230369-20230696	NONHSAT139558
11	lnc-CDY2B-3	chrY:20030904-20031124	NONHSAT139554
12	lnc-CDY2A-2	chrY:20100636-20100825	NONHSAT139556
13	lnc-CDY2A-2	chrY:20098617-20098835	NONHSAT139556
14	lnc-CDY2A-6	chrY:20278706-20278734	NONHSAT139560
15	lnc-CDY2B-9	chrY:20283081-20283269	NONHSAT139562
16	lnc-CDY2A-6	chrY:20278413-20278550	NONHSAT139560
17	lnc-CDY2A-3	chrY:20063469-20063633	NONHSAT139555
18	lnc-CDY2B-10	chrY:20340818-20341146	NONHSAT139564
19	lnc-CDY2B-5	chrY:20107081-20107289	NONHSAT139557
20	lnc-CDY2A-6	chrY:20279486-20279581	NONHSAT139560

No data

Variant related genes	Relation type
USP9YP15	TF binding region
USP9YP6	TF binding region
ACTG1P11	TF binding region
TRAPPC2P8	TF binding region
PRYP2	TF binding region
USP9YP32	TF binding region
TCEB1P12	TF binding region
ENSG00000244646	TF binding region
CDY2A	TF binding region
USP9YP16	TF binding region
USP9YP34	TF binding region
CDY8P	TF binding region
CDY7P	TF binding region
RNU1-95P	TF binding region
OFD1P2Y	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 50 )

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs375489037	chrY:20064944-20064945	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs35610792	chrY:20065054-20065055	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs113335840	chrY:20095681-20095682	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs199628740	chrY:20104256-20104257	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs200350179	chrY:20104258-20104259	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs111470346	chrY:20285577-20285578	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs113020839	chrY:20287283-20287284	Inactive region	TF binding region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:50)

Disease	PMID	Source
Testicular failure	20966427	CNVD
Honadal dysgenesis	22138850	CNVD
severe oligozoospermia and azoospermia	19731213	CNVD
Ewing''s sarcoma	21437220	CNVD
infertility	21210740	CNVD
Klinefelter syndrome	17968468	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
infertility	20668881	CNVD
Klinefelter syndrome	20603808	CNVD
Meiotic abnormalities	17428878	CNVD
Oligozoospermia	20576090	CNVD
Azoospermia	16445861	CNVD
Cryptorchidism	16988323	CNVD
Non-syndromic sensorineural hearing loss	17409464	CNVD
infertile	20603812	CNVD
infertile	22120929	CNVD
infertile	19369647	CNVD
severe oligozoospermia and azoospermia	21887237	CNVD
spermatozoa with elongated heads	17208942	CNVD
Azoospermia	17187159	CNVD
Oligozoospermia	17187159	CNVD
infertile	19440834	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
infertility	21340528	CNVD
Klinefelter syndrome	16612480	CNVD
infertile	16612480	CNVD
Infertility	16469004	CNVD
Recurrent pregnancy loss	20943704	CNVD
infertile	16469004	CNVD
infertility	18832950	CNVD
Maturation arrest	22820855	CNVD
Azoospermia	16709604	CNVD
Astheno-teratozoospermia syndrome	22371775	CNVD
Asthenozoospermia	22371775	CNVD
Azoospermia	22371775	CNVD
Oligoasthenoteratozoospermia	22371775	CNVD
Oligoasthenozoospermia	22371775	CNVD
Oligoteratozoospermia	22371775	CNVD
Teratozoospermia	22371775	CNVD
infertile	17554051	CNVD
Klinefelter syndrome	20805717	CNVD
subfertile	22371775	CNVD
infertile	19966830	CNVD
Azoospermia	20823911	CNVD
Non-syndromic sensorineural hearing loss	18200580	CNVD
infertile oligozoospermic	17712493	CNVD
Hereditary coagulopathy	21993689	CNVD
Honadal dysgenesis	21048976	CNVD
Breast cancer	21045282	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrY:20104200-20104400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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