Variant report

Variant	nsv469717
Chromosome Location	chrY:20239119-20402583
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:321)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:9)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:321 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chrY:20242116-20242220	ProgFib	skin:	n/a	n/a
2	CTCF	chrY:20267755-20267838	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTCF	chrY:20337836-20337920	Medullo	brain:	n/a	n/a
4	CTCF	chrY:20295480-20295522	GM20000	blood:	n/a	n/a
5	CTCF	chrY:20247879-20247880	Medullo	brain:	n/a	n/a
6	CTCF	chrY:20327012-20327094	GM20000	blood:	n/a	n/a
7	CTCF	chrY:20308850-20308871	LNCaP	prostate:	n/a	n/a
8	CTCF	chrY:20272583-20272640	GM20000	blood:	n/a	n/a
9	CTCF	chrY:20396659-20396744	LNCaP	prostate:	n/a	n/a
10	CTCF	chrY:20382859-20382904	ProgFib	skin:	n/a	n/a
11	CTCF	chrY:20308428-20308606	A549	lung:	n/a	n/a
12	CTCF	chrY:20316138-20316179	GM10248	blood:	n/a	n/a
13	CTCF	chrY:20280549-20280702	GM20000	blood:	n/a	n/a
14	CTCF	chrY:20399662-20399738	GM19239	blood:	n/a	n/a
15	CTCF	chrY:20327155-20327184	GM10248	blood:	n/a	n/a
16	CTCF	chrY:20310748-20310763	ProgFib	skin:	n/a	n/a
17	CTCF	chrY:20338164-20338281	Pancreas_OC	pancreas:	n/a	n/a
18	CTCF	chrY:20339690-20339742	HepG2	liver:	n/a	n/a
19	CTCF	chrY:20327182-20327236	GM10266	blood:	n/a	n/a
20	CTCF	chrY:20399927-20399988	GM10248	blood:	n/a	n/a
21	CTCF	chrY:20251609-20251660	HepG2	liver:	n/a	n/a
22	CTCF	chrY:20399564-20399764	GM12891	blood:	n/a	n/a
23	CTCF	chrY:20267683-20267835	HepG2	liver:	n/a	n/a
24	CTCF	chrY:20292220-20292225	A549	lung:	n/a	n/a
25	CTCF	chrY:20337612-20337687	Medullo	brain:	n/a	n/a
26	CTCF	chrY:20308494-20308648	ProgFib	skin:	n/a	n/a
27	CTCF	chrY:20380456-20380527	GM10248	blood:	n/a	n/a
28	CTCF	chrY:20242154-20242266	LNCaP	prostate:	n/a	n/a
29	CTCF	chrY:20308478-20308604	A549	lung:	n/a	n/a
30	CTCF	chrY:20267600-20267860	A549	lung:	n/a	n/a
31	CTCF	chrY:20267773-20267790	GM20000	blood:	n/a	n/a
32	CTCF	chrY:20300788-20300821	GM10248	blood:	n/a	n/a
33	CTCF	chrY:20274498-20274535	GM10266	blood:	n/a	n/a
34	CTCF	chrY:20247882-20248051	A549	lung:	n/a	n/a
35	CTCF	chrY:20338088-20338269	H1-hESC	embryonic stem cell:	n/a	n/a
36	CTCF	chrY:20250935-20250976	A549	lung:	n/a	n/a
37	CTCF	chrY:20292589-20292652	GM10248	blood:	n/a	n/a
38	CTCF	chrY:20247952-20248087	Pancreas_OC	pancreas:	n/a	n/a
39	CTCF	chrY:20337776-20337835	GM10266	blood:	n/a	n/a
40	CTCF	chrY:20372367-20372454	A549	lung:	n/a	n/a
41	CTCF	chrY:20338102-20338308	ProgFib	skin:	n/a	n/a
42	CTCF	chrY:20308447-20308692	LNCaP	prostate:	n/a	n/a
43	CTCF	chrY:20310128-20310197	LNCaP	prostate:	n/a	n/a
44	CTCF	chrY:20242489-20242540	LNCaP	prostate:	n/a	n/a
45	CTCF	chrY:20323314-20323328	Medullo	brain:	n/a	n/a
46	CTCF	chrY:20344137-20344225	LNCaP	prostate:	n/a	n/a
47	CTCF	chrY:20290501-20290597	GM10248	blood:	n/a	n/a
48	CTCF	chrY:20292231-20292280	A549	lung:	n/a	n/a
49	CTCF	chrY:20340292-20340416	GM10248	blood:	n/a	n/a
50	CTCF	chrY:20295820-20295834	ProgFib	skin:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDY2A-6	chrY:20278947-20279105	NONHSAT139560
2	lnc-CDY2A-6	chrY:20279486-20279581	NONHSAT139560
3	lnc-CDY2B-11	chrY:20344721-20346300	NONHSAT139565
4	lnc-CDY2A-6	chrY:20278706-20278734	NONHSAT139560
5	lnc-CDY2B-9	chrY:20285560-20285685	NONHSAT139562
6	lnc-CDY2A-6	chrY:20278413-20278550	NONHSAT139560
7	lnc-CDY2B-9	chrY:20283081-20283269	NONHSAT139562
8	lnc-CDY2B-10	chrY:20340818-20341146	NONHSAT139564
9	lnc-CDY2B-9	chrY:20284895-20284986	NONHSAT139562

No data

Variant related genes	Relation type
USP9YP15	TF binding region
TRAPPC2P8	TF binding region
CDY9P	TF binding region
PRYP2	TF binding region
ENSG00000244646	TF binding region
USP9YP16	TF binding region
RNU1-95P	TF binding region
OFD1P2Y	TF binding region
ACTG1P11	TF binding region
TCEB1P26	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 50 )

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs111470346	chrY:20285577-20285578	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs113020839	chrY:20287283-20287284	Inactive region	TF binding region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:50)

Disease	PMID	Source
Testicular failure	20966427	CNVD
Honadal dysgenesis	22138850	CNVD
severe oligozoospermia and azoospermia	19731213	CNVD
Ewing''s sarcoma	21437220	CNVD
infertility	21210740	CNVD
Klinefelter syndrome	17968468	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
infertility	20668881	CNVD
Klinefelter syndrome	20603808	CNVD
Meiotic abnormalities	17428878	CNVD
Oligozoospermia	20576090	CNVD
Azoospermia	16445861	CNVD
Cryptorchidism	16988323	CNVD
Non-syndromic sensorineural hearing loss	17409464	CNVD
infertile	20603812	CNVD
infertile	22120929	CNVD
infertile	19369647	CNVD
severe oligozoospermia and azoospermia	21887237	CNVD
spermatozoa with elongated heads	17208942	CNVD
Azoospermia	17187159	CNVD
Oligozoospermia	17187159	CNVD
infertile	19440834	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
infertility	21340528	CNVD
Klinefelter syndrome	16612480	CNVD
infertile	16612480	CNVD
Infertility	16469004	CNVD
Recurrent pregnancy loss	20943704	CNVD
infertile	16469004	CNVD
infertility	18832950	CNVD
Maturation arrest	22820855	CNVD
Azoospermia	16709604	CNVD
Astheno-teratozoospermia syndrome	22371775	CNVD
Asthenozoospermia	22371775	CNVD
Azoospermia	22371775	CNVD
Oligoasthenoteratozoospermia	22371775	CNVD
Oligoasthenozoospermia	22371775	CNVD
Oligoteratozoospermia	22371775	CNVD
Teratozoospermia	22371775	CNVD
infertile	17554051	CNVD
Klinefelter syndrome	20805717	CNVD
subfertile	22371775	CNVD
infertile	19966830	CNVD
Azoospermia	20823911	CNVD
Non-syndromic sensorineural hearing loss	18200580	CNVD
infertile oligozoospermic	17712493	CNVD
Hereditary coagulopathy	21993689	CNVD
Honadal dysgenesis	21048976	CNVD
Breast cancer	21045282	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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