Variant report

Variant	esv3323847
Chromosome Location	chrY:19761870-20363015
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:893)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:36)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:893 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chrY:19779922-19780198	LNCaP	prostate:	n/a	n/a
2	CTCF	chrY:20110123-20110166	GM10266	blood:	n/a	n/a
3	CTCF	chrY:19856991-19857086	GM10248	blood:	n/a	n/a
4	CTCF	chrY:19798360-19798421	Medullo	brain:	n/a	n/a
5	CTCF	chrY:20031489-20031557	Medullo	brain:	n/a	n/a
6	CTCF	chrY:20274498-20274535	GM10266	blood:	n/a	n/a
7	CTCF	chrY:19944068-19944356	Medullo	brain:	n/a	n/a
8	CTCF	chrY:20250824-20251039	A549	lung:	n/a	n/a
9	CTCF	chrY:19862646-19862680	GM10248	blood:	n/a	n/a
10	CTCF	chrY:19841322-19841341	A549	lung:	n/a	n/a
11	CTCF	chrY:20308490-20308512	GM10266	blood:	n/a	n/a
12	CTCF	chrY:20315870-20315895	Pancreas_OC	pancreas:	n/a	n/a
13	CTCF	chrY:19928543-19928600	GM10266	blood:	n/a	n/a
14	CTCF	chrY:19893600-19893619	Medullo	brain:	n/a	n/a
15	CTCF	chrY:19911880-19912078	HepG2	liver:	n/a	n/a
16	CTCF	chrY:20111138-20111237	GM10266	blood:	n/a	n/a
17	CTCF	chrY:20236603-20236775	LNCaP	prostate:	n/a	n/a
18	CTCF	chrY:20338055-20338333	Medullo	brain:	n/a	n/a
19	CTCF	chrY:20327012-20327094	GM20000	blood:	n/a	n/a
20	CTCF	chrY:20140841-20140860	LNCaP	prostate:	n/a	n/a
21	CTCF	chrY:20337836-20337920	Medullo	brain:	n/a	n/a
22	CTCF	chrY:20130790-20130870	GM10266	blood:	n/a	n/a
23	CTCF	chrY:20267792-20267841	GM20000	blood:	n/a	n/a
24	CTCF	chrY:20298094-20298120	GM10248	blood:	n/a	n/a
25	CTCF	chrY:19898569-19898653	GM10248	blood:	n/a	n/a
26	CTCF	chrY:20204188-20204324	LNCaP	prostate:	n/a	n/a
27	CTCF	chrY:19931663-19931863	LNCaP	prostate:	n/a	n/a
28	CTCF	chrY:19944685-19944767	Medullo	brain:	n/a	n/a
29	CTCF	chrY:19944056-19944365	A549	lung:	n/a	n/a
30	CTCF	chrY:20308317-20308734	A549	lung:	n/a	n/a
31	CTCF	chrY:20022801-20022884	GM10248	blood:	n/a	n/a
32	CTCF	chrY:19931600-19931926	A549	lung:	n/a	n/a
33	CTCF	chrY:20235440-20235650	A549	lung:	n/a	n/a
34	CTCF	chrY:20226228-20226303	LNCaP	prostate:	n/a	n/a
35	CTCF	chrY:19973591-19973671	GM10248	blood:	n/a	n/a
36	CTCF	chrY:20089741-20089794	A549	lung:	n/a	n/a
37	CTCF	chrY:20339690-20339742	HepG2	liver:	n/a	n/a
38	CTCF	chrY:19780179-19780253	A549	lung:	n/a	n/a
39	CTCF	chrY:20308421-20308620	A549	lung:	n/a	n/a
40	CTCF	chrY:19841169-19841198	A549	lung:	n/a	n/a
41	CTCF	chrY:20310128-20310197	LNCaP	prostate:	n/a	n/a
42	CTCF	chrY:20105993-20106087	GM20000	blood:	n/a	n/a
43	CTCF	chrY:20334514-20334619	GM10248	blood:	n/a	n/a
44	CTCF	chrY:19779753-19779757	GM20000	blood:	n/a	n/a
45	CTCF	chrY:19942237-19942249	GM10248	blood:	n/a	n/a
46	CTCF	chrY:20115473-20115487	GM20000	blood:	n/a	n/a
47	CTCF	chrY:19937596-19937630	ProgFib	skin:	n/a	n/a
48	CTCF	chrY:19871006-19871423	A549	lung:	n/a	n/a
49	CTCF	chrY:20308447-20308692	LNCaP	prostate:	n/a	n/a
50	CTCF	chrY:20235435-20235662	Pancreas_OC	pancreas:	n/a	n/a

No data

(count:36 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDY2A-4	chrY:20230369-20230696	NONHSAT139558
2	lnc-CDY2B-4	chrY:19901042-19901070	NONHSAT139549
3	lnc-CDY2B-2	chrY:19949081-19949408	NONHSAT139552
4	lnc-CDY2A-2	chrY:20100636-20100825	NONHSAT139556
5	lnc-CDY2B-11	chrY:20344721-20346300	NONHSAT139565
6	lnc-CDY2A-11	chrY:19833478-19835057	NONHSAT139545
7	lnc-CDY2A-2	chrY:20098617-20098835	NONHSAT139556
8	lnc-CDY2A-9	chrY:19894790-19894881	NONHSAT139548
9	lnc-CDY2B-3	chrY:20024579-20024703	NONHSAT139554
10	lnc-CDY2A-9	chrY:19896507-19896695	NONHSAT139548
11	lnc-CDY2A-5	chrY:20020635-20020855	NONHSAT139553
12	lnc-CDY2A-5	chrY:20022478-20022686	NONHSAT139553
13	lnc-CDY2B-9	chrY:20284895-20284986	NONHSAT139562
14	lnc-CDY2A-6	chrY:20278413-20278550	NONHSAT139560
15	lnc-CDY2A-2	chrY:20096229-20096449	NONHSAT139556
16	lnc-CDY2B-5	chrY:20108912-20109132	NONHSAT139557
17	lnc-CDY2B-3	chrY:20028903-20029103	NONHSAT139554
18	lnc-CDY2A-9	chrY:19894090-19894215	NONHSAT139548
19	lnc-CDY2A-2	chrY:20105048-20105140	NONHSAT139556
20	lnc-CDY2B-3	chrY:20033289-20033510	NONHSAT139554
21	lnc-CDY2B-4	chrY:19901223-19901364	NONHSAT139549
22	lnc-CDY2B-4	chrY:19900671-19900841	NONHSAT139549
23	lnc-CDY2B-9	chrY:20283081-20283269	NONHSAT139562
24	lnc-CDY2B-3	chrY:20026834-20026918	NONHSAT139554
25	lnc-CDY2A-6	chrY:20278706-20278734	NONHSAT139560
26	lnc-CDY2B-4	chrY:19900195-19900290	NONHSAT139549
27	lnc-CDY2B-5	chrY:20107081-20107289	NONHSAT139557
28	lnc-CDY2A-2	chrY:20102823-20102907	NONHSAT139556
29	lnc-CDY2A-6	chrY:20279486-20279581	NONHSAT139560
30	lnc-CDY2A-3	chrY:20063469-20063633	NONHSAT139555
31	lnc-CDY2B-3	chrY:20030904-20031124	NONHSAT139554
32	lnc-CDY2A-3	chrY:20063942-20065380	NONHSAT139555
33	lnc-CDY2A-10	chrY:19838632-19838960	NONHSAT139546
34	lnc-CDY2B-9	chrY:20285560-20285685	NONHSAT139562
35	lnc-CDY2A-6	chrY:20278947-20279105	NONHSAT139560
36	lnc-CDY2B-10	chrY:20340818-20341146	NONHSAT139564

No data

Variant related genes	Relation type
ENSG00000225896	TF binding region
ACTG1P2	TF binding region
USP9YP15	TF binding region
PRYP1	TF binding region
USP9YP6	TF binding region
TRAPPC2P8	TF binding region
CDY9P	TF binding region
PRYP2	TF binding region
USP9YP23	TF binding region
ENSG00000244646	TF binding region
USP9YP16	TF binding region
USP9YP27	TF binding region
USP9YP34	TF binding region
CDY5P	TF binding region
CDY6P	TF binding region
TRAPPC2P3	TF binding region
CDY7P	TF binding region
RNU1-95P	TF binding region
TCEB1P6	TF binding region
CDY2B	TF binding region
OFD1P1Y	TF binding region
OFD1P2Y	TF binding region
ACTG1P11	TF binding region
USP9YP32	TF binding region
TCEB1P12	TF binding region
CDY2A	TF binding region
CDY8P	TF binding region
ENSG00000250868	TF binding region
TCEB1P26	TF binding region
USP9YP7	TF binding region
RNU1-128P	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 50 )

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs111775591	chrY:19858755-19858756	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs113802103	chrY:19918516-19918517	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs113025388	chrY:19919297-19919298	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs111648270	chrY:19919511-19919512	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs375489037	chrY:20064944-20064945	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs35610792	chrY:20065054-20065055	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs113335840	chrY:20095681-20095682	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs199628740	chrY:20104256-20104257	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs200350179	chrY:20104258-20104259	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs111470346	chrY:20285577-20285578	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs113020839	chrY:20287283-20287284	Inactive region	TF binding region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:50)

Disease	PMID	Source
Testicular failure	20966427	CNVD
Honadal dysgenesis	22138850	CNVD
severe oligozoospermia and azoospermia	19731213	CNVD
Ewing''s sarcoma	21437220	CNVD
infertility	21210740	CNVD
Klinefelter syndrome	17968468	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
infertility	20668881	CNVD
Klinefelter syndrome	20603808	CNVD
Meiotic abnormalities	17428878	CNVD
Oligozoospermia	20576090	CNVD
Azoospermia	16445861	CNVD
Cryptorchidism	16988323	CNVD
Non-syndromic sensorineural hearing loss	17409464	CNVD
infertile	20603812	CNVD
infertile	22120929	CNVD
infertile	19369647	CNVD
severe oligozoospermia and azoospermia	21887237	CNVD
spermatozoa with elongated heads	17208942	CNVD
Azoospermia	17187159	CNVD
Oligozoospermia	17187159	CNVD
infertile	19440834	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
infertility	21340528	CNVD
Klinefelter syndrome	16612480	CNVD
infertile	16612480	CNVD
Infertility	16469004	CNVD
Recurrent pregnancy loss	20943704	CNVD
infertile	16469004	CNVD
infertility	18832950	CNVD
Maturation arrest	22820855	CNVD
Azoospermia	16709604	CNVD
Astheno-teratozoospermia syndrome	22371775	CNVD
Asthenozoospermia	22371775	CNVD
Azoospermia	22371775	CNVD
Oligoasthenoteratozoospermia	22371775	CNVD
Oligoasthenozoospermia	22371775	CNVD
Oligoteratozoospermia	22371775	CNVD
Teratozoospermia	22371775	CNVD
infertile	17554051	CNVD
Klinefelter syndrome	20805717	CNVD
subfertile	22371775	CNVD
infertile	19966830	CNVD
Azoospermia	20823911	CNVD
Non-syndromic sensorineural hearing loss	18200580	CNVD
infertile oligozoospermic	17712493	CNVD
Hereditary coagulopathy	21993689	CNVD
Honadal dysgenesis	21048976	CNVD
Breast cancer	21045282	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrY:20104200-20104400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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