Variant report

Variant	esv3396874
Chromosome Location	chr3:87729312-87732010
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:105 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567504088	chr3:87729314-87729315	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs148455127	chr3:87729318-87729319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs112659636	chr3:87729319-87729320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs571870392	chr3:87729320-87729321	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs538259754	chr3:87729323-87729324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs556891253	chr3:87729352-87729353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs371336605	chr3:87729394-87729395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs575261498	chr3:87729403-87729404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs542730942	chr3:87729405-87729406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs553435653	chr3:87729452-87729453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs554833725	chr3:87729453-87729454	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs375582924	chr3:87729460-87729461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs540572413	chr3:87729471-87729472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs368639952	chr3:87729494-87729495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs371677174	chr3:87729507-87729508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs545094747	chr3:87729512-87729513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs147906259	chr3:87729529-87729530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs545042692	chr3:87729564-87729565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs564934574	chr3:87729593-87729594	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs201626451	chr3:87729670-87729671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs145368473	chr3:87729678-87729679	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs576874903	chr3:87729705-87729706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs180985573	chr3:87729742-87729743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs544084253	chr3:87729766-87729767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs184461703	chr3:87729784-87729785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs547125522	chr3:87729786-87729787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs190571692	chr3:87729851-87729852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs571868924	chr3:87729860-87729861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs182272983	chr3:87729883-87729884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs147663256	chr3:87729886-87729887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs114909444	chr3:87729891-87729892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs200381039	chr3:87729964-87729965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs186945274	chr3:87729986-87729987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs141113097	chr3:87730033-87730034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs190504040	chr3:87730034-87730035	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs572933534	chr3:87730111-87730112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs533977372	chr3:87730130-87730131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs9310054	chr3:87730149-87730150	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs62267026	chr3:87730220-87730221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs577078394	chr3:87730250-87730251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs150269946	chr3:87730263-87730264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs115573907	chr3:87730278-87730279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs575229313	chr3:87730335-87730336	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs542573635	chr3:87730445-87730446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs561052190	chr3:87730446-87730447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs181049670	chr3:87730524-87730525	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs546896254	chr3:87730554-87730555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs537245043	chr3:87730560-87730561	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs141433945	chr3:87730573-87730574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs565464209	chr3:87730599-87730600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Soft tissue tumor	16732325	CNVD
small cell lung cancer	20016488	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD
Non-small cell lung cancer	21829676	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87728800-87732000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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