Variant report

Variant	rs9310054
Chromosome Location	chr3:87730149-87730150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1073129	1.00[EUR][1000 genomes]
rs13314013	1.00[EUR][1000 genomes]
rs13319055	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13321063	1.00[EUR][1000 genomes]
rs1393917	1.00[EUR][1000 genomes]
rs17025109	1.00[EUR][1000 genomes]
rs17025129	1.00[EUR][1000 genomes]
rs1827532	1.00[EUR][1000 genomes]
rs1906912	1.00[EUR][1000 genomes]
rs2048290	1.00[EUR][1000 genomes]
rs28665353	1.00[EUR][1000 genomes]
rs28786223	1.00[EUR][1000 genomes]
rs28880606	1.00[EUR][1000 genomes]
rs60336865	1.00[EUR][1000 genomes]
rs6551508	1.00[EUR][1000 genomes]
rs6773344	1.00[EUR][1000 genomes]
rs6774094	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6774364	1.00[EUR][1000 genomes]
rs6781824	1.00[EUR][1000 genomes]
rs6796732	1.00[EUR][1000 genomes]
rs72911672	1.00[EUR][1000 genomes]
rs72911679	1.00[EUR][1000 genomes]
rs72913711	1.00[EUR][1000 genomes]
rs72923550	1.00[EUR][1000 genomes]
rs72923552	1.00[EUR][1000 genomes]
rs73845080	1.00[EUR][1000 genomes]
rs7621718	1.00[EUR][1000 genomes]
rs7626243	1.00[EUR][1000 genomes]
rs7626476	1.00[EUR][1000 genomes]
rs7631622	1.00[EUR][1000 genomes]
rs7641305	1.00[EUR][1000 genomes]
rs7647226	1.00[EUR][1000 genomes]
rs9310055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9812260	1.00[EUR][1000 genomes]
rs9813634	1.00[EUR][1000 genomes]
rs9817423	1.00[EUR][1000 genomes]
rs9819296	1.00[EUR][1000 genomes]
rs9819558	1.00[EUR][1000 genomes]
rs9828274	1.00[EUR][1000 genomes]
rs9832462	1.00[EUR][1000 genomes]
rs9838106	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9840323	1.00[EUR][1000 genomes]
rs9842182	1.00[EUR][1000 genomes]
rs9844011	1.00[EUR][1000 genomes]
rs9849417	1.00[EUR][1000 genomes]
rs9855785	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9863972	1.00[EUR][1000 genomes]
rs9872903	1.00[EUR][1000 genomes]
rs9874465	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9874804	1.00[EUR][1000 genomes]
rs9990038	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590918	chr3:87323334-87910931	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv877137	chr3:87525540-87742747	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877138	chr3:87586061-87766543	Bivalent/Poised TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv877139	chr3:87600636-87766543	Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877140	chr3:87600636-87833897	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv834755	chr3:87624854-87789971	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv877141	chr3:87630433-87779738	Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv877142	chr3:87630433-87854277	Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv877143	chr3:87630433-87860130	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv877144	chr3:87691029-87845957	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv877145	chr3:87702109-87819195	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3446501	chr3:87728862-87732360	Weak transcription	n/a	n/a	inside rSNPs	n/a
13	esv3396874	chr3:87729312-87732010	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87728800-87732000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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