Variant report
Variant | rs9832462 |
---|---|
Chromosome Location | chr3:87936806-87936807 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1073129 | 1.00[EUR][1000 genomes] |
rs1393917 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17025109 | 1.00[EUR][1000 genomes] |
rs17025129 | 1.00[EUR][1000 genomes] |
rs1827532 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1906912 | 1.00[EUR][1000 genomes] |
rs2163420 | 0.91[AFR][1000 genomes] |
rs28665353 | 1.00[EUR][1000 genomes] |
rs28786223 | 1.00[EUR][1000 genomes] |
rs28854202 | 0.89[AFR][1000 genomes] |
rs28880606 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs55649543 | 0.84[AFR][1000 genomes] |
rs60336865 | 1.00[EUR][1000 genomes] |
rs6551508 | 1.00[EUR][1000 genomes] |
rs6773344 | 1.00[EUR][1000 genomes] |
rs6774094 | 1.00[EUR][1000 genomes] |
rs6774364 | 1.00[EUR][1000 genomes] |
rs6781824 | 1.00[EUR][1000 genomes] |
rs6782603 | 0.84[AFR][1000 genomes] |
rs6790293 | 0.84[AFR][1000 genomes] |
rs6796732 | 1.00[EUR][1000 genomes] |
rs6807663 | 0.83[AFR][1000 genomes] |
rs6809560 | 0.86[AFR][1000 genomes] |
rs72911672 | 1.00[EUR][1000 genomes] |
rs72911679 | 1.00[EUR][1000 genomes] |
rs72913711 | 1.00[EUR][1000 genomes] |
rs73845080 | 1.00[EUR][1000 genomes] |
rs7621718 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7626243 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7626476 | 1.00[EUR][1000 genomes] |
rs7631129 | 0.91[AFR][1000 genomes] |
rs7631622 | 1.00[EUR][1000 genomes] |
rs7641305 | 1.00[EUR][1000 genomes] |
rs7647226 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs7649800 | 0.89[AFR][1000 genomes] |
rs9310054 | 1.00[EUR][1000 genomes] |
rs9310055 | 1.00[EUR][1000 genomes] |
rs9812260 | 1.00[EUR][1000 genomes] |
rs9812937 | 0.87[AFR][1000 genomes] |
rs9813634 | 1.00[EUR][1000 genomes] |
rs9817423 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9819558 | 1.00[EUR][1000 genomes] |
rs9828274 | 1.00[EUR][1000 genomes] |
rs9840236 | 0.87[AFR][1000 genomes] |
rs9840323 | 1.00[EUR][1000 genomes] |
rs9842182 | 1.00[EUR][1000 genomes] |
rs9844011 | 1.00[EUR][1000 genomes] |
rs9849417 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs9863972 | 1.00[EUR][1000 genomes] |
rs9872903 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv834756 | chr3:87763793-87938179 | Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
2 | nsv1009981 | chr3:87821573-88003956 | ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
3 | nsv536634 | chr3:87821573-88003956 | Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
4 | nsv460757 | chr3:87863280-87949733 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
5 | nsv590919 | chr3:87863280-87949733 | ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
6 | nsv834758 | chr3:87867363-88014975 | Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
7 | nsv967184 | chr3:87918245-87937811 | ZNF genes & repeats Strong transcription Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
8 | esv2760794 | chr3:87932310-87953742 | Weak transcription ZNF genes & repeats Strong transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:87936400-87942600 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |