Variant report

Variant	rs9840323
Chromosome Location	chr3:87862419-87862420
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:87861321..87864231-chr3:87868355..87870648,2	K562	blood:
2	chr3:87859784..87864231-chr3:87868098..87870648,4	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1073129	1.00[EUR][1000 genomes]
rs13319055	1.00[EUR][1000 genomes]
rs1393917	1.00[EUR][1000 genomes]
rs17025109	1.00[EUR][1000 genomes]
rs17025129	1.00[EUR][1000 genomes]
rs1827532	1.00[EUR][1000 genomes]
rs1906912	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28665353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28786223	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28880606	1.00[EUR][1000 genomes]
rs60336865	1.00[EUR][1000 genomes]
rs6551508	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6773344	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6774094	1.00[EUR][1000 genomes]
rs6774364	1.00[EUR][1000 genomes]
rs6781824	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6796732	1.00[EUR][1000 genomes]
rs72911672	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72911679	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72913711	1.00[EUR][1000 genomes]
rs73845080	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7621718	1.00[EUR][1000 genomes]
rs7626243	1.00[EUR][1000 genomes]
rs7626476	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7631622	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7641305	1.00[EUR][1000 genomes]
rs7647226	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9310054	1.00[EUR][1000 genomes]
rs9310055	1.00[EUR][1000 genomes]
rs9812260	1.00[EUR][1000 genomes]
rs9813634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9817423	1.00[EUR][1000 genomes]
rs9819558	1.00[EUR][1000 genomes]
rs9828274	1.00[EUR][1000 genomes]
rs9832462	1.00[EUR][1000 genomes]
rs9838106	1.00[EUR][1000 genomes]
rs9842182	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9844011	1.00[EUR][1000 genomes]
rs9849417	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9855785	1.00[EUR][1000 genomes]
rs9863972	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872903	1.00[EUR][1000 genomes]
rs9990038	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590918	chr3:87323334-87910931	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834756	chr3:87763793-87938179	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1009981	chr3:87821573-88003956	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv536634	chr3:87821573-88003956	Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87860600-87863400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:87860600-87863800	Weak transcription	HUVEC	blood vessel
3	chr3:87860800-87863200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
4	chr3:87861000-87862800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
5	chr3:87861400-87864600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:87862400-87862600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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