Variant report

Variant	rs9819558
Chromosome Location	chr3:87828703-87828704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:87827898..87830613-chr3:87841535..87843509,2	K562	blood:

Variant related genes	Relation type
ENSG00000239572	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1073129	1.00[EUR][1000 genomes]
rs13319055	1.00[EUR][1000 genomes]
rs13322551	0.95[AFR][1000 genomes]
rs1393917	1.00[EUR][1000 genomes]
rs17025109	1.00[EUR][1000 genomes]
rs17025129	1.00[EUR][1000 genomes]
rs1827532	1.00[EUR][1000 genomes]
rs1906912	1.00[EUR][1000 genomes]
rs28665353	1.00[EUR][1000 genomes]
rs28786223	1.00[EUR][1000 genomes]
rs28880606	1.00[EUR][1000 genomes]
rs60336865	1.00[EUR][1000 genomes]
rs6551508	1.00[EUR][1000 genomes]
rs6773344	1.00[EUR][1000 genomes]
rs6774094	1.00[EUR][1000 genomes]
rs6774364	1.00[EUR][1000 genomes]
rs6781824	1.00[EUR][1000 genomes]
rs6796732	1.00[EUR][1000 genomes]
rs72911672	1.00[EUR][1000 genomes]
rs72911679	1.00[EUR][1000 genomes]
rs72913711	1.00[EUR][1000 genomes]
rs73845080	1.00[EUR][1000 genomes]
rs7621718	1.00[EUR][1000 genomes]
rs7626243	1.00[EUR][1000 genomes]
rs7626476	1.00[EUR][1000 genomes]
rs7631622	1.00[EUR][1000 genomes]
rs7641305	1.00[EUR][1000 genomes]
rs7647226	1.00[EUR][1000 genomes]
rs9310054	1.00[EUR][1000 genomes]
rs9310055	1.00[EUR][1000 genomes]
rs9812260	1.00[EUR][1000 genomes]
rs9813634	1.00[EUR][1000 genomes]
rs9817423	1.00[EUR][1000 genomes]
rs9828274	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9832462	1.00[EUR][1000 genomes]
rs9838106	1.00[EUR][1000 genomes]
rs9840323	1.00[EUR][1000 genomes]
rs9842182	1.00[EUR][1000 genomes]
rs9844011	1.00[EUR][1000 genomes]
rs9849417	1.00[EUR][1000 genomes]
rs9855785	1.00[EUR][1000 genomes]
rs9863972	1.00[EUR][1000 genomes]
rs9872903	1.00[EUR][1000 genomes]
rs9874465	1.00[EUR][1000 genomes]
rs9990038	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590918	chr3:87323334-87910931	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv877140	chr3:87600636-87833897	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv877142	chr3:87630433-87854277	Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv877143	chr3:87630433-87860130	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877144	chr3:87691029-87845957	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv834756	chr3:87763793-87938179	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1009981	chr3:87821573-88003956	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv536634	chr3:87821573-88003956	Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87827800-87830200	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr3:87828000-87829200	Weak transcription	Primary monocytes fromperipheralblood	blood

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