Variant report

Variant	nsv460757
Chromosome Location	chr3:87863280-87949733
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:87845525..87848228-chr3:87871993..87873515,2	K562	blood:
2	chr3:87859784..87864231-chr3:87868098..87870648,4	K562	blood:
3	chr3:87875136..87878119-chr3:87897744..87900423,2	K562	blood:
4	chr3:87875136..87878119-chr3:87897744..87900423,2	K562	blood:
5	chr3:64415275..64417539-chr3:87924606..87926106,2	MCF-7	breast:
6	chr3:87863971..87865487-chr3:87869989..87871603,2	MCF-7	breast:
7	chr3:87906393..87908815-chr3:87910872..87912649,2	K562	blood:
8	chr3:87948990..87949967-chr3:88052412..88052973,2	MCF-7	breast:
9	chr3:87347022..87347886-chr3:87948968..87949826,2	MCF-7	breast:
10	chr3:87863395..87865890-chr3:87873528..87875065,2	MCF-7	breast:
11	chr3:87861321..87864231-chr3:87868355..87870648,2	K562	blood:
12	chr3:87890331..87892526-chr3:87894375..87897348,2	K562	blood:
13	chr3:87906393..87908815-chr3:87910872..87912649,2	K562	blood:
14	chr3:87861321..87864231-chr3:87868355..87870648,2	K562	blood:
15	chr3:87872563..87875003-chr3:87878278..87880896,2	K562	blood:
16	chr3:87890331..87892526-chr3:87894375..87897348,2	K562	blood:
17	chr3:87910561..87911061-chr8:43092408..43093087,2	MCF-7	breast:
18	chr3:87872563..87875003-chr3:87878278..87880896,2	K562	blood:
19	chr3:87949008..87949986-chr3:88051988..88052893,3	MCF-7	breast:
20	chr3:87863395..87865890-chr3:87873528..87875065,2	MCF-7	breast:
21	chr3:87859784..87864231-chr3:87868098..87870648,4	K562	blood:
22	chr3:87843885..87846211-chr3:87904754..87906414,2	K562	blood:
23	chr3:87863971..87865487-chr3:87869989..87871603,2	MCF-7	breast:

No data

Extended variants
information (count: 2932 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:2932 , 50 per page) page: 1 2 3 4 5 6 7 ... 59

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1489777	chr3:87863280-87863281	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs147188529	chr3:87863287-87863288	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs553652774	chr3:87863288-87863289	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs111371600	chr3:87863302-87863303	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs542641764	chr3:87863309-87863310	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs1158019	chr3:87863352-87863353	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs189051568	chr3:87863362-87863363	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs577446097	chr3:87863387-87863388	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs544593437	chr3:87863413-87863414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs562892007	chr3:87863440-87863441	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs575150032	chr3:87863443-87863444	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs1158020	chr3:87863483-87863484	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs565833848	chr3:87863491-87863492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs560436013	chr3:87863493-87863494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs368117875	chr3:87863497-87863498	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs193103619	chr3:87863530-87863531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs138418365	chr3:87863537-87863538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs528494788	chr3:87863615-87863616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs551346478	chr3:87863638-87863639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs565478306	chr3:87863652-87863653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs185129986	chr3:87863669-87863670	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs571276114	chr3:87863750-87863751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs1489778	chr3:87863758-87863759	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs531336114	chr3:87863759-87863760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs549340820	chr3:87863817-87863818	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs567735289	chr3:87863852-87863853	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs551599826	chr3:87863899-87863900	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs556931325	chr3:87863908-87863909	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs373820659	chr3:87863959-87863960	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs547664393	chr3:87863980-87863981	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs548000068	chr3:87863985-87863986	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs35579610	chr3:87864006-87864007	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs536922158	chr3:87864143-87864144	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs539600868	chr3:87864165-87864166	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs548995762	chr3:87864184-87864185	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs2010539	chr3:87864233-87864234	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs143912196	chr3:87864240-87864241	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs147256479	chr3:87864249-87864250	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs556555125	chr3:87864312-87864313	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs2919251	chr3:87864362-87864363	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs2932289	chr3:87864367-87864368	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs7617952	chr3:87864384-87864385	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs2932290	chr3:87864421-87864422	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs541905874	chr3:87864425-87864426	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs113697106	chr3:87864439-87864440	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs375591215	chr3:87864440-87864441	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs554438198	chr3:87864517-87864518	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs572683977	chr3:87864539-87864540	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs1987799	chr3:87864549-87864550	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs112969555	chr3:87864606-87864607	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Soft tissue tumor	16732325	CNVD
small cell lung cancer	20016488	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD
Non-small cell lung cancer	21829676	CNVD

Chromatin state (count:237 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87860600-87863400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:87860600-87863800	Weak transcription	HUVEC	blood vessel
3	chr3:87861400-87864600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:87862600-87864000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:87862600-87866600	Weak transcription	K562	blood
6	chr3:87862800-87874800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:87863200-87863400	Strong transcription	Primary hematopoietic stem cells	blood
8	chr3:87863400-87864400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:87863400-87865200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:87863800-87864800	Enhancers	HUVEC	blood vessel
11	chr3:87864000-87866000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:87864400-87866000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:87864600-87865200	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr3:87865200-87868000	Strong transcription	Primary hematopoietic stem cells	blood
15	chr3:87866000-87866600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:87866000-87867600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:87866600-87867200	Strong transcription	K562	blood
18	chr3:87866600-87868400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:87867200-87867600	Weak transcription	K562	blood
20	chr3:87867600-87867800	Strong transcription	K562	blood
21	chr3:87867600-87868200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:87867800-87912800	Weak transcription	K562	blood
23	chr3:87868000-87870800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr3:87868200-87870800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:87868400-87870600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:87870600-87874800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:87870800-87875000	Strong transcription	Primary hematopoietic stem cells	blood
28	chr3:87870800-87875200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:87874000-87874200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr3:87874200-87874400	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr3:87874400-87878600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr3:87874800-87876000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr3:87874800-87876200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:87875000-87875200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr3:87875200-87875400	Genic enhancers	Primary hematopoietic stem cells	blood
36	chr3:87875200-87876400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:87875400-87875800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr3:87875800-87878800	Enhancers	Primary hematopoietic stem cells	blood
39	chr3:87876000-87876400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr3:87876200-87876800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr3:87876400-87877000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr3:87876400-87878800	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr3:87876800-87877800	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr3:87876800-87878400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr3:87877000-87877200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr3:87877000-87877800	Enhancers	Primary B cells from peripheral blood	blood
47	chr3:87877000-87877800	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr3:87877200-87880000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr3:87877400-87878200	Enhancers	Primary B cells from cord blood	blood
50	chr3:87878400-87878600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links