Variant report

Variant	rs1158020
Chromosome Location	chr3:87863483-87863484
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:87863395..87865890-chr3:87873528..87875065,2	MCF-7	breast:
2	chr3:87861321..87864231-chr3:87868355..87870648,2	K562	blood:
3	chr3:87859784..87864231-chr3:87868098..87870648,4	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1021846	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12497212	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1489774	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1503425	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1503426	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1503428	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1604701	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2017565	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2062811	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2200869	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2932285	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2932301	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2932306	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2932307	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2938265	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2938268	0.93[EUR][1000 genomes]
rs2938277	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72911668	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73845078	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs989563	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590918	chr3:87323334-87910931	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834756	chr3:87763793-87938179	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1009981	chr3:87821573-88003956	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv536634	chr3:87821573-88003956	Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv460757	chr3:87863280-87949733	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv590919	chr3:87863280-87949733	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87860600-87863800	Weak transcription	HUVEC	blood vessel
2	chr3:87861400-87864600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:87862600-87864000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:87862600-87866600	Weak transcription	K562	blood
5	chr3:87862800-87874800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:87863400-87864400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:87863400-87865200	Weak transcription	Primary hematopoietic stem cells	blood

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