Variant report

Variant	rs12497212
Chromosome Location	chr3:87876686-87876687
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:87875136..87878119-chr3:87897744..87900423,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1021846	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1158020	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12489455	0.94[AFR][1000 genomes]
rs12491283	0.86[AFR][1000 genomes]
rs12491978	0.93[AFR][1000 genomes]
rs12492131	0.93[AFR][1000 genomes]
rs1489774	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1503425	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1503426	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1503428	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1604701	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1847313	0.84[AFR][1000 genomes]
rs1875716	0.88[AFR][1000 genomes]
rs1910399	0.93[AFR][1000 genomes]
rs1910401	0.93[AFR][1000 genomes]
rs2010883	0.94[AFR][1000 genomes]
rs2017565	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2062811	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2200869	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2343771	0.93[AFR][1000 genomes]
rs2932285	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2932301	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2932306	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2932307	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2938265	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2938268	0.94[EUR][1000 genomes]
rs2938277	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55776072	0.88[AFR][1000 genomes]
rs57688062	0.90[AFR][1000 genomes]
rs58460783	0.93[AFR][1000 genomes]
rs60057665	0.88[AFR][1000 genomes]
rs72911668	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73845078	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs989563	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590918	chr3:87323334-87910931	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834756	chr3:87763793-87938179	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1009981	chr3:87821573-88003956	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv536634	chr3:87821573-88003956	Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv460757	chr3:87863280-87949733	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv590919	chr3:87863280-87949733	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv834758	chr3:87867363-88014975	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87867800-87912800	Weak transcription	K562	blood
2	chr3:87874400-87878600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:87875800-87878800	Enhancers	Primary hematopoietic stem cells	blood
4	chr3:87876200-87876800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:87876400-87877000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:87876400-87878800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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