Variant report

Variant	esv3397854
Chromosome Location	chr6:86352258-86355106
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:945)
CpG islands
(count:550)
Chromatin interactive
region (count:41)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:945 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:86353602-86354530	K562	blood:	n/a	chr6:86354216-86354232 chr6:86354217-86354233
2	ARID3A	chr6:86353485-86354531	HepG2	liver:	n/a	chr6:86354216-86354232 chr6:86354217-86354233
3	ARID3A	chr6:86352479-86353150	K562	blood:	n/a	n/a
4	ARID3A	chr6:86352910-86353188	HepG2	liver:	n/a	n/a
5	ATF1	chr6:86352411-86353286	K562	blood:	n/a	n/a
6	ATF2	chr6:86352740-86353198	GM12878	blood:	n/a	n/a
7	ATF2	chr6:86353471-86354254	GM12878	blood:	n/a	n/a
8	ATF2	chr6:86352773-86353189	H1-hESC	embryonic stem cell:	n/a	n/a
9	ATF2	chr6:86352740-86353222	H1-hESC	embryonic stem cell:	n/a	n/a
10	ATF2	chr6:86353454-86354545	GM12878	blood:	n/a	n/a
11	ATF2	chr6:86352303-86352658	H1-hESC	embryonic stem cell:	n/a	n/a
12	ATF2	chr6:86351609-86353333	GM12878	blood:	n/a	n/a
13	ATF3	chr6:86353449-86353695	K562	blood:	n/a	chr6:86353592-86353601
14	BACH1	chr6:86352538-86352737	K562	blood:	n/a	n/a
15	BACH1	chr6:86352084-86353992	H1-hESC	embryonic stem cell:	n/a	n/a
16	BATF	chr6:86353761-86354054	GM12878	blood:	n/a	n/a
17	BATF	chr6:86353742-86354087	GM12878	blood:	n/a	n/a
18	BCL11A	chr6:86353750-86354023	GM12878	blood:	n/a	n/a
19	BCL11A	chr6:86353640-86354065	GM12878	blood:	n/a	chr6:86353744-86353757
20	BCL3	chr6:86352857-86353271	GM12878	blood:	n/a	n/a
21	BCL3	chr6:86353332-86354070	GM12878	blood:	n/a	chr6:86353629-86353642 chr6:86353744-86353757
22	BCL3	chr6:86352326-86352885	A549	lung:	n/a	n/a
23	BCLAF1	chr6:86352245-86352756	GM12878	blood:	n/a	n/a
24	BCLAF1	chr6:86352781-86353269	GM12878	blood:	n/a	n/a
25	BCLAF1	chr6:86352276-86353226	K562	blood:	n/a	n/a
26	BCLAF1	chr6:86353424-86354164	GM12878	blood:	n/a	chr6:86353629-86353642 chr6:86353744-86353757
27	BCLAF1	chr6:86351595-86353230	GM12878	blood:	n/a	chr6:86351929-86351942 chr6:86351924-86351937
28	BCLAF1	chr6:86353331-86354246	GM12878	blood:	n/a	chr6:86353629-86353642 chr6:86353744-86353757
29	BHLHE40	chr6:86353423-86353686	HepG2	liver:	n/a	n/a
30	BHLHE40	chr6:86354995-86355240	HepG2	liver:	n/a	n/a
31	BHLHE40	chr6:86352441-86354008	HepG2	liver:	n/a	chr6:86353372-86353388
32	BHLHE40	chr6:86351352-86354083	K562	blood:	n/a	chr6:86351895-86351911 chr6:86353372-86353388
33	BHLHE40	chr6:86353355-86353720	HepG2	liver:	n/a	chr6:86353372-86353388
34	BHLHE40	chr6:86351575-86354182	GM12878	blood:	n/a	chr6:86351895-86351911 chr6:86353372-86353388
35	BHLHE40	chr6:86353472-86354016	A549	lung:	n/a	n/a
36	BRCA1	chr6:86352406-86353181	H1-hESC	embryonic stem cell:	n/a	n/a
37	BRCA1	chr6:86352454-86353228	Hela-S3	cervix:	n/a	n/a
38	BRCA1	chr6:86352254-86352454	GM12878	blood:	n/a	n/a
39	BRCA1	chr6:86353528-86354385	Hela-S3	cervix:	n/a	n/a
40	BRCA1	chr6:86353421-86353988	HepG2	liver:	n/a	n/a
41	BRCA1	chr6:86352858-86353133	HepG2	liver:	n/a	n/a
42	CBX3	chr6:86353799-86354057	K562	blood:	n/a	n/a
43	CBX3	chr6:86354963-86355683	HCT-116	colon:	n/a	n/a
44	CBX3	chr6:86355060-86355662	K562	blood:	n/a	n/a
45	CBX3	chr6:86352332-86353299	K562	blood:	n/a	n/a
46	CBX3	chr6:86353412-86354177	K562	blood:	n/a	n/a
47	CCNT2	chr6:86351511-86354005	K562	blood:	n/a	chr6:86353623-86353632 chr6:86352049-86352058 chr6:86351924-86351933 chr6:86353135-86353144
48	CEBPB	chr6:86352284-86354299	HCT-116	colon:	n/a	chr6:86353925-86353934 chr6:86353924-86353935 chr6:86353923-86353936 chr6:86353923-86353936 chr6:86353923-86353934
49	CEBPB	chr6:86353723-86354154	ECC-1	luminal epithelium:	n/a	chr6:86353925-86353934 chr6:86353924-86353935 chr6:86353923-86353936 chr6:86353923-86353936 chr6:86353923-86353934
50	CEBPB	chr6:86355044-86355449	Hela-S3	cervix:	n/a	n/a

(count:550 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:86352627-86352677	GM06990	blood:	n/a
2	chr6:86352627-86352677	GM06990	blood:	n/a
3	chr6:86353884-86353934	CMK	blood:	n/a
4	chr6:86352623-86352673	HEEpiC	esophagus:	n/a
5	chr6:86352627-86352677	AG04449	skin:	fetal
6	chr6:86352627-86352677	HMEC	breast:	n/a
7	chr6:86353909-86353959	SK-N-MC	brain:	n/a
8	chr6:86353909-86353959	SK-N-SH	brain:	n/a
9	chr6:86352623-86352673	HAEpiC	amniotic membrane:	n/a
10	chr6:86352623-86352673	HepG2	liver:	n/a
11	chr6:86353909-86353959	ovcar-3	ovarian:	n/a
12	chr6:86352429-86352479	NT2-D1	testis:	n/a
13	chr6:86352636-86352686	GM12878	blood:	n/a
14	chr6:86352639-86352689	GM06990	blood:	n/a
15	chr6:86354018-86354068	SK-N-SH_RA	brain:	n/a
16	chr6:86352627-86352677	PrEC	prostate:	n/a
17	chr6:86352627-86352677	NH-A	brain:	n/a
18	chr6:86352627-86352677	BJ	skin:	n/a
19	chr6:86352429-86352479	AG04449	skin:	fetal
20	chr6:86352429-86352479	GM06990	blood:	n/a
21	chr6:86354018-86354068	HEEpiC	esophagus:	n/a
22	chr6:86352627-86352677	LNCaP	prostate:	n/a
23	chr6:86353909-86353959	GM12878	blood:	n/a
24	chr6:86352639-86352689	CMK	blood:	n/a
25	chr6:86352627-86352677	NHBE	bronchial:	n/a
26	chr6:86352636-86352686	SK-N-MC	brain:	n/a
27	chr6:86354018-86354068	PrEC	prostate:	n/a
28	chr6:86353884-86353934	AG09319	gingival:	n/a
29	chr6:86353909-86353959	ProgFib	skin:	n/a
30	chr6:86352627-86352677	HCM	heart:	n/a
31	chr6:86353447-86353497	HCM	heart:	n/a
32	chr6:86353909-86353959	K562	blood:	n/a
33	chr6:86352627-86352677	NB4	blood:	n/a
34	chr6:86353447-86353497	GM19239	blood:	n/a
35	chr6:86353447-86353497	HCT-116	colon:	n/a
36	chr6:86352627-86352677	Hepatocyte	liver:	n/a
37	chr6:86353884-86353934	PANC-1	pancreas:	n/a
38	chr6:86353909-86353959	Hepatocyte	liver:	n/a
39	chr6:86353884-86353934	MCF-7	breast:	n/a
40	chr6:86353909-86353959	U87	brain:	n/a
41	chr6:86352639-86352689	Caco-2	colon:	n/a
42	chr6:86352636-86352686	A549	lung:	n/a
43	chr6:86352623-86352673	HIPEpiC	eye:	n/a
44	chr6:86353909-86353959	Caco-2	colon:	n/a
45	chr6:86352636-86352686	GM06990	blood:	n/a
46	chr6:86352623-86352673	AoSMC	blood vessel:	n/a
47	chr6:86352636-86352686	BE2_C	brain:	n/a
48	chr6:86352623-86352673	HCT-116	colon:	n/a
49	chr6:86353884-86353934	HCM	heart:	n/a
50	chr6:86352639-86352689	GM12891	blood:	n/a

(count:41 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:86299824..86305374-chr6:86350530..86356322,11	MCF-7	breast:
2	chr6:86351881..86352582-chr6:166796561..166797309,2	Hela-S3	cervix:
3	chr6:86338689..86357756-chr6:86378394..86390434,115	MCF-7	breast:
4	chr16:31469119..31472117-chr6:86351411..86353551,2	MCF-7	breast:
5	chr1:100435521..100436021-chr6:86353095..86354012,2	NB4	blood:
6	chr6:86301331..86304881-chr6:86350851..86355985,12	MCF-7	breast:
7	chr1:28974647..28975336-chr6:86352945..86353511,2	Hela-S3	cervix:
8	chr14:104181859..104182379-chr6:86353323..86354107,2	Hela-S3	cervix:
9	chr6:86320215..86324957-chr6:86350476..86355138,8	MCF-7	breast:
10	chr6:86352417..86353203-chr6:86386848..86388878,6	MCF-7	breast:
11	chr13:48611678..48612294-chr6:86352743..86353305,2	Hela-S3	cervix:
12	chr6:86352184..86353057-chr7:139043808..139044711,2	Hela-S3	cervix:
13	chr6:86352030..86354482-chr6:87864521..87866716,2	MCF-7	breast:
14	chr6:84138710..84141481-chr6:86352138..86354158,2	MCF-7	breast:
15	chr16:4475412..4476300-chr6:86352840..86353822,2	Hela-S3	cervix:
16	chr6:86288404..86291892-chr6:86352318..86354794,4	MCF-7	breast:
17	chr6:15400993..15401512-chr6:86353235..86353761,2	HCT-116	colon:
18	chr20:62168632..62169262-chr6:86352659..86353308,2	Hela-S3	cervix:
19	chr2:232574718..232575695-chr6:86352392..86353013,2	Hela-S3	cervix:
20	chr15:45670316..45671297-chr6:86353473..86353980,2	Hela-S3	cervix:
21	chr10:50746415..50747283-chr6:86353514..86354169,2	Hela-S3	cervix:
22	chr6:86323129..86325610-chr6:86352120..86353787,3	K562	blood:
23	chr20:45947519..45949919-chr6:86351890..86353788,2	MCF-7	breast:
24	chr6:86262845..86265792-chr6:86354340..86355847,2	K562	blood:
25	chr19:50380296..50381317-chr6:86353205..86354186,3	Hela-S3	cervix:
26	chr6:86352199..86352987-chr6:86387888..86388697,2	NB4	blood:
27	chr15:45670796..45672296-chr6:86353314..86354922,2	MCF-7	breast:
28	chr6:86353346..86353951-chr6:86387391..86388065,2	MCF-7	breast:
29	chr13:111364810..111365745-chr6:86352411..86352955,2	Hela-S3	cervix:
30	chr6:86300457..86307827-chr6:86347697..86356337,20	K562	blood:
31	chr15:45670796..45671317-chr6:86353272..86353912,2	MCF-7	breast:
32	chr20:46414091..46415235-chr6:86351442..86352442,6	MCF-7	breast:
33	chr6:86353298..86353960-chr7:143599004..143599679,2	Hela-S3	cervix:
34	chr6:86322096..86325209-chr6:86349720..86353694,5	K562	blood:
35	chr6:86300873..86305245-chr6:86347697..86356641,19	K562	blood:
36	chr6:86350291..86355305-chr6:86366070..86378212,20	MCF-7	breast:
37	chr20:46413152..46415353-chr6:86350444..86353443,6	MCF-7	breast:
38	chr4:120133686..120134675-chr6:86352822..86353423,2	Hela-S3	cervix:
39	chr10:97889799..97890340-chr6:86353223..86353989,2	HCT-116	colon:
40	chr6:86353436..86354584-chr6:86387812..86388533,4	Hela-S3	cervix:
41	chr14:64319297..64319918-chr6:86352603..86353316,2	Hela-S3	cervix:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SYNCRIP-1	chr6:86354449-86354628	XLOC_005778

No data

Variant related genes	Relation type
SYNCRIP	TF binding region
SYNCRIP	CpG island
ENSG00000261420	chromatin interactions
ENSG00000104946	chromatin interactions
ENSG00000008083	chromatin interactions
ENSG00000272008	chromatin interactions
ENSG00000117620	chromatin interactions
ENSG00000153487	chromatin interactions
ENSG00000273391	chromatin interactions
ENSG00000101040	chromatin interactions
ENSG00000203875	chromatin interactions
ENSG00000196562	chromatin interactions
ENSG00000101213	chromatin interactions
ENSG00000171766	chromatin interactions
ENSG00000146963	chromatin interactions
ENSG00000262246	chromatin interactions
ENSG00000103423	chromatin interactions
ENSG00000134905	chromatin interactions
ENSG00000140691	chromatin interactions
ENSG00000065833	chromatin interactions
ENSG00000271793	chromatin interactions
ENSG00000260267	chromatin interactions
ENSG00000136143	chromatin interactions
ENSG00000145390	chromatin interactions
ENSG00000177853	chromatin interactions
ENSG00000178636	chromatin interactions
ENSG00000220563	chromatin interactions
ENSG00000204673	chromatin interactions
ENSG00000258838	chromatin interactions
ENSG00000136159	chromatin interactions
ENSG00000225830	chromatin interactions
ENSG00000054654	chromatin interactions
ENSG00000100711	chromatin interactions
ENSG00000187514	chromatin interactions
ENSG00000198420	chromatin interactions
ENSG00000188994	chromatin interactions
ENSG00000270103	chromatin interactions
ENSG00000135317	chromatin interactions

Extended variants
information (count: 99 )
Associated
traits (count: 107 )

Variant overlapped rSNPs/rCNVs (count:99 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs562189529	chr6:86352315-86352316	Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
2	rs529896319	chr6:86352320-86352321	Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
3	rs548442587	chr6:86352329-86352330	Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
4	rs569929827	chr6:86352342-86352343	Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
5	rs536949576	chr6:86352369-86352370	Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
6	rs369219216	chr6:86352384-86352385	Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
7	rs552109100	chr6:86352429-86352430	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
8	rs570369866	chr6:86352436-86352437	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
9	rs534387825	chr6:86352479-86352480	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
10	rs552628599	chr6:86352485-86352486	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
11	rs370425507	chr6:86352525-86352526	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
12	rs535646473	chr6:86352531-86352532	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
13	rs557321541	chr6:86352533-86352534	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
14	rs575849454	chr6:86352545-86352546	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
15	rs546191453	chr6:86352578-86352579	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
16	rs3812135	chr6:86352594-86352595	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
17	rs564475540	chr6:86352596-86352597	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
18	rs573131092	chr6:86352608-86352609	Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
19	rs115804085	chr6:86352656-86352657	Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
20	rs562152432	chr6:86352675-86352676	Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	18 gene(s)	Overlapped CNVs	n/a
21	rs529455158	chr6:86352704-86352705	Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	18 gene(s)	Overlapped CNVs	n/a
22	rs557109737	chr6:86352712-86352713	Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
23	rs574185563	chr6:86352717-86352718	Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
24	rs376638815	chr6:86352719-86352720	Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
25	rs536724274	chr6:86352721-86352722	Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
26	rs369151598	chr6:86352733-86352734	Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
27	rs563344991	chr6:86352736-86352737	Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
28	rs530797798	chr6:86352741-86352742	Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
29	rs190815806	chr6:86352746-86352747	Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
30	rs550857676	chr6:86352752-86352753	Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
31	rs534303588	chr6:86352756-86352757	Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
32	rs150345600	chr6:86352778-86352779	Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
33	rs377076328	chr6:86352785-86352786	Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
34	rs561206714	chr6:86352794-86352795	Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
35	rs567815413	chr6:86352810-86352811	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
36	rs200487128	chr6:86352811-86352812	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
37	rs535182115	chr6:86352873-86352874	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	25 gene(s)	Overlapped CNVs	n/a
38	rs557491228	chr6:86352882-86352883	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	25 gene(s)	Overlapped CNVs	n/a
39	rs374304157	chr6:86352913-86352914	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	25 gene(s)	Overlapped CNVs	n/a
40	rs540049899	chr6:86352985-86352986	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	24 gene(s)	Overlapped CNVs	n/a
41	rs558150789	chr6:86352994-86352995	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	24 gene(s)	Overlapped CNVs	n/a
42	rs530247414	chr6:86353028-86353029	Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	23 gene(s)	Overlapped CNVs	n/a
43	rs573617347	chr6:86353032-86353033	Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	23 gene(s)	Overlapped CNVs	n/a
44	rs540625381	chr6:86353039-86353040	Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	23 gene(s)	Overlapped CNVs	n/a
45	rs373950359	chr6:86353205-86353206	Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	24 gene(s)	Overlapped CNVs	n/a
46	rs555800061	chr6:86353257-86353258	Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	26 gene(s)	Overlapped CNVs	n/a
47	rs112477212	chr6:86353287-86353288	Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	27 gene(s)	Overlapped CNVs	n/a
48	rs547143930	chr6:86353353-86353354	Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	25 gene(s)	Overlapped CNVs	n/a
49	rs544393818	chr6:86353483-86353484	Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	Overlapped CNVs	n/a
50	rs563470152	chr6:86353496-86353497	Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:107)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
craniofacial dysmorphism	21918468	CNVD
Myelofibrosis	22110671	CNVD
Neurodevelopmental disorder	22521361	CNVD
abnormal development	18461090	CNVD
Myelodysplastic syndrome	18508791	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:345 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86346600-86352400	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr6:86349000-86354600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:86349200-86353000	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
4	chr6:86349800-86354200	Active TSS	NHLF	lung
5	chr6:86350200-86352600	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr6:86350200-86353000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:86350400-86352400	Active TSS	Right Atrium	heart
8	chr6:86350400-86354200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:86350400-86354200	Active TSS	Fetal Intestine Small	intestine
10	chr6:86350400-86354400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:86350400-86354400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:86350400-86354400	Active TSS	Fetal Intestine Large	intestine
13	chr6:86350400-86354600	Active TSS	Aorta	Aorta
14	chr6:86350400-86354600	Active TSS	Ovary	ovary
15	chr6:86350400-86354600	Active TSS	Right Ventricle	heart
16	chr6:86350400-86354800	Active TSS	Fetal Muscle Leg	muscle
17	chr6:86350400-86355200	Active TSS	H9 Cell Line	embryonic stem cell
18	chr6:86350400-86355200	Active TSS	Psoas Muscle	Psoas
19	chr6:86350600-86352600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr6:86350600-86354200	Active TSS	Fetal Kidney	kidney
21	chr6:86350600-86354400	Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr6:86350600-86355000	Active TSS	HSMMtube	muscle
23	chr6:86350600-86355200	Active TSS	Stomach Smooth Muscle	stomach
24	chr6:86350600-86355600	Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr6:86350800-86354200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:86350800-86354200	Active TSS	Fetal Stomach	stomach
27	chr6:86350800-86354400	Active TSS	HMEC	breast
28	chr6:86350800-86354600	Active TSS	Fetal Muscle Trunk	muscle
29	chr6:86350800-86354600	Active TSS	NHDF-Ad	bronchial
30	chr6:86350800-86355200	Active TSS	Colonic Mucosa	Colon
31	chr6:86350800-86355200	Active TSS	A549	lung
32	chr6:86351000-86352800	Active TSS	Fetal Brain Male	brain
33	chr6:86351000-86353000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:86351000-86353800	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr6:86351000-86354000	Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr6:86351000-86354000	Active TSS	HUVEC	blood vessel
37	chr6:86351000-86354200	Active TSS	H1 Cell Line	embryonic stem cell
38	chr6:86351000-86354200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:86351000-86354200	Active TSS	Fetal Lung	lung
40	chr6:86351000-86354200	Active TSS	Hela-S3	cervix
41	chr6:86351000-86354400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr6:86351000-86354400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:86351000-86354400	Active TSS	Sigmoid Colon	Sigmoid Colon
44	chr6:86351000-86354400	Active TSS	GM12878-XiMat	blood
45	chr6:86351000-86354400	Active TSS	NH-A	brain
46	chr6:86351000-86354600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:86351000-86355000	Active TSS	Rectal Smooth Muscle	rectum
48	chr6:86351200-86352600	Bivalent/Poised TSS	HepG2	liver
49	chr6:86351200-86354000	Active TSS	Esophagus	oesophagus
50	chr6:86351200-86354000	Active TSS	Gastric	stomach

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