Variant report

Variant	rs534387825
Chromosome Location	chr6:86352479-86352480
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:46413152..46415353-chr6:86350444..86353443,6	MCF-7	breast:
2	chr6:86338689..86357756-chr6:86378394..86390434,115	MCF-7	breast:
3	chr6:86352184..86353057-chr7:139043808..139044711,2	Hela-S3	cervix:
4	chr6:86352199..86352987-chr6:86387888..86388697,2	NB4	blood:
5	chr13:111364810..111365745-chr6:86352411..86352955,2	Hela-S3	cervix:
6	chr6:86320215..86324957-chr6:86350476..86355138,8	MCF-7	breast:
7	chr6:86299824..86305374-chr6:86350530..86356322,11	MCF-7	breast:
8	chr6:86351881..86352582-chr6:166796561..166797309,2	Hela-S3	cervix:
9	chr6:86352030..86354482-chr6:87864521..87866716,2	MCF-7	breast:
10	chr6:86300873..86305245-chr6:86347697..86356641,19	K562	blood:
11	chr6:86300457..86307827-chr6:86347697..86356337,20	K562	blood:
12	chr6:86301331..86304881-chr6:86350851..86355985,12	MCF-7	breast:
13	chr6:86288404..86291892-chr6:86352318..86354794,4	MCF-7	breast:
14	chr16:31469119..31472117-chr6:86351411..86353551,2	MCF-7	breast:
15	chr20:45947519..45949919-chr6:86351890..86353788,2	MCF-7	breast:
16	chr6:86350291..86355305-chr6:86366070..86378212,20	MCF-7	breast:
17	chr6:84138710..84141481-chr6:86352138..86354158,2	MCF-7	breast:
18	chr6:86352417..86353203-chr6:86386848..86388878,6	MCF-7	breast:
19	chr6:86322096..86325209-chr6:86349720..86353694,5	K562	blood:
20	chr2:232574718..232575695-chr6:86352392..86353013,2	Hela-S3	cervix:
21	chr6:86323129..86325610-chr6:86352120..86353787,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000187514	Chromatin interaction
ENSG00000135317	Chromatin interaction
ENSG00000146963	Chromatin interaction
ENSG00000196562	Chromatin interaction
ENSG00000140691	Chromatin interaction
ENSG00000260267	Chromatin interaction
ENSG00000203875	Chromatin interaction
ENSG00000272008	Chromatin interaction
ENSG00000134905	Chromatin interaction
ENSG00000220563	Chromatin interaction
ENSG00000065833	Chromatin interaction
ENSG00000101040	Chromatin interaction
ENSG00000271793	Chromatin interaction
ENSG00000153487	Chromatin interaction
ENSG00000261420	Chromatin interaction
ENSG00000273391	Chromatin interaction
ENSG00000188994	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022445	chr6:85972678-86392968	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv538349	chr6:85972678-86392968	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv886334	chr6:86214507-86394403	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
4	esv3397854	chr6:86352258-86355106	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86349000-86354600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:86349200-86353000	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
3	chr6:86349800-86354200	Active TSS	NHLF	lung
4	chr6:86350200-86352600	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr6:86350200-86353000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:86350400-86354200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:86350400-86354200	Active TSS	Fetal Intestine Small	intestine
8	chr6:86350400-86354400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:86350400-86354400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:86350400-86354400	Active TSS	Fetal Intestine Large	intestine
11	chr6:86350400-86354600	Active TSS	Aorta	Aorta
12	chr6:86350400-86354600	Active TSS	Ovary	ovary
13	chr6:86350400-86354600	Active TSS	Right Ventricle	heart
14	chr6:86350400-86354800	Active TSS	Fetal Muscle Leg	muscle
15	chr6:86350400-86355200	Active TSS	H9 Cell Line	embryonic stem cell
16	chr6:86350400-86355200	Active TSS	Psoas Muscle	Psoas
17	chr6:86350600-86352600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr6:86350600-86354200	Active TSS	Fetal Kidney	kidney
19	chr6:86350600-86354400	Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr6:86350600-86355000	Active TSS	HSMMtube	muscle
21	chr6:86350600-86355200	Active TSS	Stomach Smooth Muscle	stomach
22	chr6:86350600-86355600	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr6:86350800-86354200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:86350800-86354200	Active TSS	Fetal Stomach	stomach
25	chr6:86350800-86354400	Active TSS	HMEC	breast
26	chr6:86350800-86354600	Active TSS	Fetal Muscle Trunk	muscle
27	chr6:86350800-86354600	Active TSS	NHDF-Ad	bronchial
28	chr6:86350800-86355200	Active TSS	Colonic Mucosa	Colon
29	chr6:86350800-86355200	Active TSS	A549	lung
30	chr6:86351000-86352800	Active TSS	Fetal Brain Male	brain
31	chr6:86351000-86353000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:86351000-86353800	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr6:86351000-86354000	Active TSS	HUES64 Cell Line	embryonic stem cell
34	chr6:86351000-86354000	Active TSS	HUVEC	blood vessel
35	chr6:86351000-86354200	Active TSS	H1 Cell Line	embryonic stem cell
36	chr6:86351000-86354200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:86351000-86354200	Active TSS	Fetal Lung	lung
38	chr6:86351000-86354200	Active TSS	Hela-S3	cervix
39	chr6:86351000-86354400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr6:86351000-86354400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:86351000-86354400	Active TSS	Sigmoid Colon	Sigmoid Colon
42	chr6:86351000-86354400	Active TSS	GM12878-XiMat	blood
43	chr6:86351000-86354400	Active TSS	NH-A	brain
44	chr6:86351000-86354600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:86351000-86355000	Active TSS	Rectal Smooth Muscle	rectum
46	chr6:86351200-86352600	Bivalent/Poised TSS	HepG2	liver
47	chr6:86351200-86354000	Active TSS	Esophagus	oesophagus
48	chr6:86351200-86354000	Active TSS	Gastric	stomach
49	chr6:86351200-86354000	Active TSS	Lung	lung
50	chr6:86351200-86354000	Active TSS	Stomach Mucosa	stomach

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