Variant report

Variant	esv3400262
Chromosome Location	chr17:37655033-37655580
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 105 )

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs138149642	chr17:37655041-37655042	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs192205425	chr17:37655108-37655109	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs149316209	chr17:37655121-37655122	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs4795372	chr17:37655128-37655129	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
5	rs4795373	chr17:37655132-37655133	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
6	rs554831094	chr17:37655137-37655138	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs569706785	chr17:37655138-37655139	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs188415345	chr17:37655139-37655140	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs181182427	chr17:37655143-37655144	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs143628235	chr17:37655147-37655148	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs185883392	chr17:37655151-37655152	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs375989321	chr17:37655176-37655177	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs6146052	chr17:37655180-37655181	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs4795374	chr17:37655184-37655185	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs200959233	chr17:37655188-37655189	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs201319493	chr17:37655192-37655193	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs377157777	chr17:37655412-37655413	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs367975127	chr17:37655416-37655417	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs371802995	chr17:37655420-37655421	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs552327423	chr17:37655431-37655432	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs570511554	chr17:37655443-37655444	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs534385304	chr17:37655450-37655451	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs553153422	chr17:37655454-37655455	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs371118276	chr17:37655459-37655460	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs375789736	chr17:37655460-37655461	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs7219414	chr17:37655461-37655462	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs7224204	chr17:37655465-37655466	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs8080529	chr17:37655471-37655472	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs535783402	chr17:37655473-37655474	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs556833801	chr17:37655493-37655494	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs575263992	chr17:37655521-37655522	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs189035146	chr17:37655547-37655548	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs181629960	chr17:37655566-37655567	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:105)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Ewing''s sarcoma	21437220	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Ovarian cancer	22174824	CNVD
Melanoma	18172304	CNVD
Moyamoya disease	22323933	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ovarian cancer	21781307	CNVD
Colorectal cancer	21645411	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Medulloblastoma	21979893	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell lymphomas	19863542	CNVD
Cancer	16751803	CNVD
Chordoma	21602918	CNVD
Neurofibromatosis	20686819	CNVD
Peripheral nerve sheath tumors	20686819	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	17897457	CNVD
Neuroblastoma	17327916	CNVD
Breast cancer	21264507	CNVD
Endometrial cancer	22040021	CNVD
Neuroblastoma	21484798	CNVD
Breast cancer	22028636	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute myeloid leukemia	20724749	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17157792	CNVD
Bladder cancer	19088036	CNVD
Gastric cancer	17167181	CNVD
Breast cancer	19287154	CNVD
Leukemia	20874852	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Neuroblastoma	18664255	CNVD
Neuroblastoma	17533364	CNVD
Human rectal carcinomas	16397240	CNVD
Meningioma	19431122	CNVD
Neurocytoma	17123091	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastric cancer	24379144	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Gastric cancer	18160780	CNVD
Hepatocellular carcinoma	16785998	CNVD
Breast cancer	17850661	CNVD
Primary lung adenocarcinoma	16799635	CNVD
HIV/AIDS	18848619	CNVD
Rheumatoid arthritis	19220326	CNVD
Rheumatoid arthritis	18848619	CNVD
Systemic lupus erythematosus	19220326	CNVD
Systemic lupus erythematosus	18848619	CNVD
Type 1 diabetes	19220326	CNVD
HIV/AIDS	17330138	CNVD
Basal cell lymphoma	17053054	CNVD
Autism	19955444	CNVD
Schizophrenia	19955444	CNVD
Acute monocytic leukemia	16498392	CNVD
Breast cancer	20409316	CNVD
Myelodysplastic syndrome	18663149	CNVD
Breast cancer	17457667	CNVD
Breast cancer	16951389	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16620391	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22048815	CNVD
Breast cancer	17603634	CNVD
Follicular lymphoma	20505157	CNVD
Non-small cell lung cancer	20864512	CNVD
Cancer	21183584	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	20953835	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21804112	CNVD
Myelofibrosis	22110671	CNVD
Ovarian neoplasms	16753589	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Sezary syndrome	18413736	CNVD
Cancer	20164920	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:129 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37624000-37680400	Weak transcription	Fetal Brain Male	brain
2	chr17:37624000-37690600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:37626600-37690600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr17:37627000-37661600	Strong transcription	Fetal Intestine Small	intestine
5	chr17:37628400-37682200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr17:37629200-37655400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr17:37630800-37657200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr17:37634200-37688600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr17:37635000-37659200	Weak transcription	Stomach Mucosa	stomach
10	chr17:37635200-37680600	Weak transcription	Fetal Heart	heart
11	chr17:37636200-37685800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr17:37640400-37691000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr17:37642000-37689600	Strong transcription	Fetal Thymus	thymus
14	chr17:37642600-37680400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr17:37643200-37659800	Weak transcription	Psoas Muscle	Psoas
16	chr17:37643200-37688600	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr17:37643400-37689000	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr17:37643800-37668800	Strong transcription	Fetal Stomach	stomach
19	chr17:37644000-37685200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr17:37644400-37688200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr17:37645000-37663200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr17:37645000-37663400	Strong transcription	Thymus	Thymus
23	chr17:37645000-37669200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr17:37645000-37689000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr17:37645000-37689600	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr17:37645400-37685600	Strong transcription	Fetal Muscle Trunk	muscle
27	chr17:37645600-37689200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr17:37646000-37661000	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr17:37646000-37684800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr17:37646000-37688400	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr17:37646400-37662400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr17:37646400-37664400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr17:37646400-37668800	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr17:37646400-37688200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr17:37646400-37688600	Strong transcription	Fetal Intestine Large	intestine
36	chr17:37646400-37689800	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr17:37646600-37656600	Strong transcription	Duodenum Mucosa	Duodenum
38	chr17:37646600-37660400	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr17:37646600-37660800	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr17:37646600-37668600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr17:37646600-37687200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr17:37646600-37688200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr17:37646600-37688800	Strong transcription	Liver	Liver
44	chr17:37646600-37689600	Strong transcription	Dnd41	blood
45	chr17:37646600-37690200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr17:37646800-37661400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr17:37646800-37662400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr17:37646800-37663000	Strong transcription	Fetal Muscle Leg	muscle
49	chr17:37646800-37663800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr17:37646800-37666400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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