Variant report

Variant	rs552327423
Chromosome Location	chr17:37655431-37655432
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
5	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
6	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
7	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
8	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
10	nsv532712	chr17:37521822-37768345	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
11	nsv1063848	chr17:37575622-37707592	Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
12	esv3419071	chr17:37654476-37656474	Strong transcription Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3370428	chr17:37654926-37655974	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3402680	chr17:37655017-37655599	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv2263528	chr17:37655025-37655614	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv3400262	chr17:37655033-37655580	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
17	esv3314689	chr17:37655056-37655549	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
18	esv3314690	chr17:37655056-37655549	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv3314688	chr17:37655065-37655556	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
20	esv3393729	chr17:37655066-37655525	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
21	esv1352810	chr17:37655179-37655462	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
22	nsv111901	chr17:37655180-37655461	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
23	nsv112352	chr17:37655230-37655458	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37624000-37680400	Weak transcription	Fetal Brain Male	brain
2	chr17:37624000-37690600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:37626600-37690600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr17:37627000-37661600	Strong transcription	Fetal Intestine Small	intestine
5	chr17:37628400-37682200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr17:37630800-37657200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr17:37634200-37688600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr17:37635000-37659200	Weak transcription	Stomach Mucosa	stomach
9	chr17:37635200-37680600	Weak transcription	Fetal Heart	heart
10	chr17:37636200-37685800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr17:37640400-37691000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr17:37642000-37689600	Strong transcription	Fetal Thymus	thymus
13	chr17:37642600-37680400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr17:37643200-37659800	Weak transcription	Psoas Muscle	Psoas
15	chr17:37643200-37688600	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr17:37643400-37689000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr17:37643800-37668800	Strong transcription	Fetal Stomach	stomach
18	chr17:37644000-37685200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr17:37644400-37688200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr17:37645000-37663200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr17:37645000-37663400	Strong transcription	Thymus	Thymus
22	chr17:37645000-37669200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr17:37645000-37689000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr17:37645000-37689600	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr17:37645400-37685600	Strong transcription	Fetal Muscle Trunk	muscle
26	chr17:37645600-37689200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr17:37646000-37661000	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr17:37646000-37684800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr17:37646000-37688400	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr17:37646400-37662400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr17:37646400-37664400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr17:37646400-37668800	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr17:37646400-37688200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr17:37646400-37688600	Strong transcription	Fetal Intestine Large	intestine
35	chr17:37646400-37689800	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr17:37646600-37656600	Strong transcription	Duodenum Mucosa	Duodenum
37	chr17:37646600-37660400	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr17:37646600-37660800	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr17:37646600-37668600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr17:37646600-37687200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr17:37646600-37688200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr17:37646600-37688800	Strong transcription	Liver	Liver
43	chr17:37646600-37689600	Strong transcription	Dnd41	blood
44	chr17:37646600-37690200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr17:37646800-37661400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr17:37646800-37662400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr17:37646800-37663000	Strong transcription	Fetal Muscle Leg	muscle
48	chr17:37646800-37663800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr17:37646800-37666400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr17:37646800-37682200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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