Variant report

Variant	esv3401387
Chromosome Location	chr12:40876811-40877867
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MUC19-1	chr12:40872855-40879178	NONHSAT027728

Extended variants
information (count: 58 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:58 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs538036100	chr12:40876816-40876817	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs2933354	chr12:40876817-40876818	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs568269856	chr12:40876834-40876835	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs535916552	chr12:40876846-40876847	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs111971648	chr12:40876855-40876856	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs2933355	chr12:40876870-40876871	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs539482331	chr12:40876906-40876907	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs369110055	chr12:40876916-40876917	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs139002563	chr12:40876920-40876921	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs4768270	chr12:40876925-40876926	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs373093227	chr12:40876929-40876930	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs201549706	chr12:40876930-40876931	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs4768271	chr12:40876933-40876934	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs4768272	chr12:40876939-40876940	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs4768273	chr12:40876949-40876950	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs4768274	chr12:40876963-40876964	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs4768275	chr12:40877007-40877008	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs144440388	chr12:40877022-40877023	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs544100694	chr12:40877044-40877045	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs561908006	chr12:40877046-40877047	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs2933356	chr12:40877062-40877063	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs190235998	chr12:40877078-40877079	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs149224449	chr12:40877112-40877113	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs372626183	chr12:40877113-40877114	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs551928013	chr12:40877137-40877138	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs74076590	chr12:40877161-40877162	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs61913653	chr12:40877186-40877187	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs558420306	chr12:40877201-40877202	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs61913654	chr12:40877203-40877204	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs61913655	chr12:40877215-40877216	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs76180644	chr12:40877232-40877233	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs550114146	chr12:40877249-40877250	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs568233110	chr12:40877287-40877288	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs529125863	chr12:40877290-40877291	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs7310404	chr12:40877293-40877294	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs74076591	chr12:40877330-40877331	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs566216143	chr12:40877335-40877336	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs539815394	chr12:40877336-40877337	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs2933357	chr12:40877358-40877359	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs140747783	chr12:40877371-40877372	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs368392930	chr12:40877405-40877406	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs537314407	chr12:40877440-40877441	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs74076593	chr12:40877442-40877443	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs573875185	chr12:40877451-40877452	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs1844979	chr12:40877484-40877485	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs138759517	chr12:40877541-40877542	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs142785342	chr12:40877582-40877583	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs545891875	chr12:40877625-40877626	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
49	rs117803807	chr12:40877632-40877633	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
50	rs73100433	chr12:40877694-40877695	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Seminomas	18059402	CNVD
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ewing''s sarcoma	21437220	CNVD
Testicular germ cell tumor	18059402	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Cancer	20164919	CNVD
Neurodevelopmental disorder	22521361	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	21949216	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Glioblastoma multiforme	21080181	CNVD
Renal cell carcinoma	19461508	CNVD
Burkitt''s lymphoma	18698080	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
Cancer	21183584	CNVD
Hirschsprung''s Disease	21712996	CNVD
Lissencephaly	21572526	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Autism	20858243	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Breast cancer	19602461	CNVD
Breast cancer	17899364	CNVD
Cancer	20164920	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40877600-40878000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
2	chr12:40877600-40878800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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